folder restructuring #2

Author: dtyagi

.github/workflows/run-benchmark.yml

@@ -40,7 +40,7 @@ jobs:
       - name: run-fenics-snakemake-benchmarks
         shell: bash -l {0}
         run: |
-          cd $GITHUB_WORKSPACE/benchmarks/linear-elasticity-plate-with-hole/
+          cd $GITHUB_WORKSPACE/benchmarks/linear-elastic-plate-with-hole/
           snakemake --use-conda --force --cores 'all'
       
       - name: run-Kratos-snakemake-benchmarks
@@ -52,7 +52,7 @@ jobs:
       - name: run-fenics-nextflow-benchmark
         shell: bash -l {0}
         run: |
-          cd $GITHUB_WORKSPACE/benchmarks/linear-elastic/FEniCS/infinite-plate-with-hole-nextflow/
+          cd $GITHUB_WORKSPACE/benchmarks/linear-elastic-plate-with-hole/FEniCS_nextflow/
           nextflow run main.nf
 
       #- name: run-optimization-workflow
@@ -72,7 +72,7 @@ jobs:
         with:
             name: fenics-output
             path: |
-              benchmarks/linear-elasticity-plate-with-hole/data
+              benchmarks/linear-elastic-plate-with-hole/data
       
       - name: Archive kratos data
         uses: actions/upload-artifact@v4

benchmarks/linear-elastic/FEniCS/infinite-plate-with-hole-nextflow/create_input_files.py renamed to benchmarks/linear-elastic-plate-with-hole/FEniCS_nextflow/create_input_files.py

@@ -0,0 +1,21 @@
+profiles {
+  conda {
+    process.conda = 'environment.yml' 
+  }
+}
+//No need to specify profile each time
+conda.enabled = true // this or use -with-conda in command line
+
+plugins {
+  id 'nf-prov'
+}
+
+prov {
+  enabled = true
+  formats {
+    legacy {
+      file = 'provenance.json'
+      overwrite = true
+    }
+  }
+}