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Evaluation/evaluate.sh

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@@ -12,13 +12,20 @@ do
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#====================================================
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nativepath="../Data/Natives"
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predpath="../Predictions/WithMSA"
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native="Native/"$PDBID"_native.pdb"
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path=""
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native="Native/"$PDBID"_native.pdb"
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prediction="Prediction/"$PDBID"_$toolname.pdb"
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if [ "$toolname" != "RNAComposer" ]; then
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predpath="../Predictions/WithMSA"
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predfile=$predpath/$PDBID/$PDBID"_$toolname.pdb"
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else
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predpath="../Predictions/RNAComposer"
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predfile=$predpath/$PDBID/$PDBID".pdb"
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fi
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rm Native/*
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rm Prediction/*
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rm -rf runs/default/*
@@ -30,10 +37,10 @@ do
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mkdir -p pdbs/references
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cp $nativepath/$PDBID"_native.pdb" $native
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cp $predpath/$PDBID/$PDBID"_$toolname.pdb" $prediction
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cp $predfile $prediction
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cp $nativepath/$PDBID"_native.pdb" pdbs/references
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cp $predpath/$PDBID/$PDBID"_$toolname.pdb" pdbs/models
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cp $predfile pdbs/models
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#TM-score calculation
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#====================================================

Predictions/RNAComposer/6YMC_A/6YMC_A.pdb

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Predictions/RNAComposer/7ECM_A/7ECM_A.pdb

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Predictions/RNAComposer/7EDL_A/7EDL_A.pdb

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Predictions/RNAComposer/7EDM_A/7EDM_A.pdb

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Predictions/RNAComposer/7EEM_A/7EEM_A.pdb

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Predictions/RNAComposer/7EFG_A/7EFG_A.pdb

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Predictions/RNAComposer/7EQJ_A/7EQJ_A.pdb

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Predictions/RNAComposer/7EXY_A/7EXY_A.pdb

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Predictions/RNAComposer/7KUB_A/7KUB_A.pdb

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