Merge pull request #256 from CliMA/ncc/update-Oceananigans

Update Oceananigans to v0.75

Author: navidcy

Manifest.toml

@@ -63,15 +63,15 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
 version = "1.0.8+0"
 
 [[CEnum]]
-git-tree-sha1 = "215a9aa4a1f23fbd05b92769fdd62559488d70e9"
+git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90"
 uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
-version = "0.4.1"
+version = "0.4.2"
 
 [[CFTime]]
 deps = ["Dates", "Printf"]
-git-tree-sha1 = "bca6cb6ee746e6485ca4535f6cc29cf3579a0f20"
+git-tree-sha1 = "ed2e76c1c3c43fd9d0cb9248674620b29d71f2d1"
 uuid = "179af706-886a-5703-950a-314cd64e0468"
-version = "0.1.1"
+version = "0.1.2"
 
 [[CUDA]]
 deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "DataStructures", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"]
@@ -122,9 +122,9 @@ version = "0.7.0"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "96b0bc6c52df76506efc8a441c6cf1adcb1babc4"
+git-tree-sha1 = "b153278a25dd42c65abbf4e62344f9d22e59191b"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.42.0"
+version = "3.43.0"
 
 [[CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -148,9 +148,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
 version = "0.2.0"
 
 [[DataAPI]]
-git-tree-sha1 = "cc70b17275652eb47bc9e5f81635981f13cea5c8"
+git-tree-sha1 = "fb5f5316dd3fd4c5e7c30a24d50643b73e37cd40"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.9.0"
+version = "1.10.0"
 
 [[DataDeps]]
 deps = ["BinaryProvider", "HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"]
@@ -284,12 +284,6 @@ git-tree-sha1 = "0fa77022fe4b511826b39c894c90daf5fce3334a"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
 version = "0.9.17"
 
-[[HypergeometricFunctions]]
-deps = ["DualNumbers", "LinearAlgebra", "SpecialFunctions", "Test"]
-git-tree-sha1 = "65e4589030ef3c44d3b90bdc5aac462b4bb05567"
-uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
-version = "0.3.8"
-
 [[IfElse]]
 git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
 uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
@@ -370,9 +364,9 @@ version = "0.7.2"
 
 [[LDLFactorizations]]
 deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"]
-git-tree-sha1 = "399bbe845e06e1c2d44ebb241f554d45eaf66788"
+git-tree-sha1 = "736e01b9b2d443c4e3351aebe551b8a374ab9c05"
 uuid = "40e66cde-538c-5869-a4ad-c39174c6795b"
-version = "0.8.1"
+version = "0.8.2"
 
 [[LLVM]]
 deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
@@ -415,9 +409,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[LogExpFunctions]]
 deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "58f25e56b706f95125dcb796f39e1fb01d913a71"
+git-tree-sha1 = "a970d55c2ad8084ca317a4658ba6ce99b7523571"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.10"
+version = "0.3.12"
 
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -436,9 +430,9 @@ version = "0.19.2"
 
 [[MPICH_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "8eed51eb836c8f47781cdb493ffd5f56370c0496"
+git-tree-sha1 = "3dacfc006764fe498515a022c3976b7e133c4008"
 uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4"
-version = "4.0.1+0"
+version = "4.0.2+0"
 
 [[MacroTools]]
 deps = ["Markdown", "Random"]
@@ -492,9 +486,9 @@ version = "0.3.3"
 
 [[NCDatasets]]
 deps = ["CFTime", "DataStructures", "Dates", "NetCDF_jll", "Printf"]
-git-tree-sha1 = "0547c0e25ba1e2d54d519b66080f7483ee24f050"
+git-tree-sha1 = "4e52976dc950413a8458273af8f7eaae5f7e899a"
 uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab"
-version = "0.12.2"
+version = "0.12.4"
 
 [[NaNMath]]
 git-tree-sha1 = "737a5957f387b17e74d4ad2f440eb330b39a62c5"
@@ -512,9 +506,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 
 [[Oceananigans]]
 deps = ["Adapt", "CUDA", "CUDAKernels", "Crayons", "CubedSphere", "Dates", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SafeTestsets", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays", "Tullio"]
-git-tree-sha1 = "69a922509d8c0fb47a320ee945a5a339027ec85b"
+git-tree-sha1 = "1c4c4d39d47684b871a27355ec6bf670bde66d9a"
 uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09"
-version = "0.73.7"
+version = "0.75.2"
 
 [[OffsetArrays]]
 deps = ["Adapt"]
@@ -561,37 +555,37 @@ version = "1.4.1"
 
 [[PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "e8185b83b9fc56eb6456200e873ce598ebc7f262"
+git-tree-sha1 = "3114946c67ef9925204cc024a73c9e679cebe0d7"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.7"
+version = "0.11.8"
 
 [[Parsers]]
 deps = ["Dates"]
-git-tree-sha1 = "621f4f3b4977325b9128d5fae7a8b4829a0c2222"
+git-tree-sha1 = "1285416549ccfcdf0c50d4997a94331e88d68413"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.2.4"
+version = "2.3.1"
 
 [[PencilArrays]]
-deps = ["ArrayInterface", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "Requires", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"]
-git-tree-sha1 = "743e865b818da62667f585f8450ea4bcae004989"
+deps = ["Adapt", "ArrayInterface", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "Requires", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"]
+git-tree-sha1 = "690dd0accf18b2a1e26ef10820665f7192dacad3"
 uuid = "0e08944d-e94e-41b1-9406-dcf66b6a9d2e"
-version = "0.15.3"
+version = "0.16.1"
 
 [[PencilFFTs]]
 deps = ["AbstractFFTs", "FFTW", "LinearAlgebra", "MPI", "PencilArrays", "Reexport", "TimerOutputs"]
-git-tree-sha1 = "47808b022d4a1568745421239db6366c8dceeee7"
+git-tree-sha1 = "6a8f42f2fab1b0966ba8e3bada37a6bd416636d3"
 uuid = "4a48f351-57a6-4416-9ec4-c37015456aae"
-version = "0.13.3"
+version = "0.13.4"
 
 [[Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
 [[Preferences]]
 deps = ["TOML"]
-git-tree-sha1 = "d3538e7f8a790dc8903519090857ef8e1283eecd"
+git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.2.5"
+version = "1.3.0"
 
 [[Printf]]
 deps = ["Unicode"]
@@ -615,9 +609,9 @@ version = "2.4.2"
 
 [[Quaternions]]
 deps = ["DualNumbers", "LinearAlgebra", "Random"]
-git-tree-sha1 = "3754f35199da1bb4a55211ddbfd64cb1efee2272"
+git-tree-sha1 = "b327e4db3f2202a4efafe7569fcbe409106a1f75"
 uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
-version = "0.5.4"
+version = "0.5.6"
 
 [[REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@@ -669,9 +663,9 @@ version = "0.3.0+0"
 
 [[Rotations]]
 deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"]
-git-tree-sha1 = "a167638e2cbd8ac41f9cd57282cab9b042fa26e6"
+git-tree-sha1 = "3177100077c68060d63dd71aec209373c3ec339b"
 uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc"
-version = "1.3.0"
+version = "1.3.1"
 
 [[SCS]]
 deps = ["LinearAlgebra", "MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_jll", "SparseArrays"]
@@ -733,15 +727,15 @@ version = "1.8.4"
 
 [[Static]]
 deps = ["IfElse"]
-git-tree-sha1 = "87e9954dfa33fd145694e42337bdd3d5b07021a6"
+git-tree-sha1 = "b1f1f60bf4f25d8b374480fb78c7b9785edf95fd"
 uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
-version = "0.6.0"
+version = "0.6.2"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "4f6ec5d99a28e1a749559ef7dd518663c5eca3d5"
+git-tree-sha1 = "cd56bf18ed715e8b09f06ef8c6b781e6cdc49911"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.4.3"
+version = "1.4.4"
 
 [[StaticPermutations]]
 git-tree-sha1 = "193c3daa18ff3e55c1dae66acb6a762c4a3bdb0b"
@@ -754,9 +748,9 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
 [[StatsAPI]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "c3d8ba7f3fa0625b062b82853a7d5229cb728b6b"
+git-tree-sha1 = "c82aaa13b44ea00134f8c9c89819477bd3986ecd"
 uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.2.1"
+version = "1.3.0"
 
 [[StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
@@ -765,16 +759,16 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 version = "0.33.16"
 
 [[StatsFuns]]
-deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "72e6abd6fc9ef0fa62a159713c83b7637a14b2b8"
+deps = ["ChainRulesCore", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
+git-tree-sha1 = "5950925ff997ed6fb3e985dcce8eb1ba42a0bbe7"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "0.9.17"
+version = "0.9.18"
 
 [[Strided]]
 deps = ["LinearAlgebra", "TupleTools"]
-git-tree-sha1 = "4d581938087ca90eab9bd4bb6d270edaefd70dcd"
+git-tree-sha1 = "7c4bcef07d559776a9e2a009c441547fb9eb5c92"
 uuid = "5e0ebb24-38b0-5f93-81fe-25c709ecae67"
-version = "1.1.2"
+version = "1.2.1"
 
 [[StructArrays]]
 deps = ["Adapt", "DataAPI", "StaticArrays", "Tables"]
@@ -829,9 +823,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[TimerOutputs]]
 deps = ["ExprTools", "Printf"]
-git-tree-sha1 = "d60b0c96a16aaa42138d5d38ad386df672cb8bd8"
+git-tree-sha1 = "11db03dd5bbc0d2b57a570d228a0f34538c586b1"
 uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
-version = "0.5.16"
+version = "0.5.17"
 
 [[TranscodingStreams]]
 deps = ["Random", "Test"]
@@ -841,9 +835,9 @@ version = "0.9.6"
 
 [[Tullio]]
 deps = ["ChainRulesCore", "DiffRules", "LinearAlgebra", "Requires"]
-git-tree-sha1 = "7830c974acc69437a3fee35dd7b510a74cbc862d"
+git-tree-sha1 = "859e2e9a7222553a0c052e423557cedb49376da9"
 uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc"
-version = "0.3.3"
+version = "0.3.4"
 
 [[TupleTools]]
 git-tree-sha1 = "3c712976c47707ff893cf6ba4354aa14db1d8938"

Project.toml

@@ -27,8 +27,8 @@ Distributions = "0.25"
 EnsembleKalmanProcesses = "0.3"
 FileIO = "1"
 JLD2 = "0.4"
+Oceananigans = "0.75"
 OffsetArrays = "1"
-Oceananigans = "0.73"
 OrderedCollections = "1"
 ProgressBars = "1"
 SpecialFunctions = "1, 2"