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remove kernelspec
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helm-based-workflows/templates/msmapper-notebook.yaml

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@@ -54,7 +54,6 @@ spec:
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command: [bash]
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source: |
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python -m pip install --upgrade git+https://github.com/DiamondLightSource/i16_msmapper.git
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python -m ipykernel install --prefix=/tmp/venv --name=venv
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python -m papermill /tmp/notebook.ipynb /tmp/notebook.ipynb \
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-p datadir "{{`{{ workflow.parameters.visitdir }}`}}"
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-p inpath "{{`{{ workflow.parameters.inpath }}`}}" \

helm-based-workflows/templates/xas-notebook.yaml

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@@ -45,7 +45,6 @@ spec:
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command: [bash]
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source: |
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echo '{{ .Files.Get "notebooks/xas_notebook.ipynb" | b64enc }}' | base64 -d > /tmp/notebook.ipynb
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echo '{{ .Files.Get "notebooks/requirements.txt" | b64enc }}' | base64 -d > /tmp/requirements.txt
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volumeMounts:
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- name: tmp
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mountPath: /tmp
@@ -55,7 +54,6 @@ spec:
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command: [bash]
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source: |
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python -m pip install --upgrade git+https://github.com/DanPorter/mmg_toolbox.git
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python -m ipykernel install --prefix=/tmp/venv --name=venv
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python -m papermill /tmp/notebook.ipynb /tmp/notebook.ipynb \
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-p inpath "{{`{{ workflow.parameters.inpath }}`}}" \
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-p outpath "{{`{{ workflow.parameters.outpath }}`}}"

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