Merge pull request #113 from FourierFlows/FixDocDeployment

Fix Docs deployment

Author: glwagner

.travis.yml

@@ -5,21 +5,21 @@ os:
   - linux
 
 julia:
-  - 1.0
+  - 1.1
   - nightly
 
 matrix:
   allow_failures:
     - julia: nightly
 
 after_success:
-  - julia --project -e 'using Pkg; Pkg.add("Coverage"); Pkg.dir("FourierFlows"); using Coverage; Coveralls.submit(Coveralls.process_folder());'
-  - julia --project -e 'using Pkg; Pkg.add("Coverage"); Pkg.dir("FourierFlows"); using Coverage; Codecov.submit(Codecov.process_folder())'
+  - julia --project -e 'using Pkg; Pkg.add("Coverage"); import FourierFlows; joinpath(dirname(pathof(FourierFlows)), ".."); using Coverage; Coveralls.submit(Coveralls.process_folder());'
+  - julia --project -e 'using Pkg; Pkg.add("Coverage"); import FourierFlows; joinpath(dirname(pathof(FourierFlows)), ".."); using Coverage; Codecov.submit(Codecov.process_folder())'
 
 jobs:
   include:
     - stage: "Documentation"
-      julia: 1.0
+      julia: 1.1
       os: linux
       script:
         - julia --project=docs/ -e 'using Pkg; Pkg.instantiate();

Manifest.toml

@@ -16,16 +16,16 @@ version = "1.0.0"
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[BinaryProvider]]
-deps = ["Libdl", "SHA"]
+deps = ["Libdl", "Logging", "SHA"]
 git-tree-sha1 = "c7361ce8a2129f20b0e05a89f7070820cfed6648"
 uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
-version = "0.5.4"
+version = "0.5.6"
 
 [[CodecZlib]]
-deps = ["BinaryProvider", "Libdl", "Test", "TranscodingStreams"]
-git-tree-sha1 = "36bbf5374c661054d41410dc53ff752972583b9b"
+deps = ["BinaryProvider", "Libdl", "TranscodingStreams"]
+git-tree-sha1 = "05916673a2627dd91b4969ff8ba6941bc85a960e"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.5.2"
+version = "0.6.0"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
@@ -46,10 +46,10 @@ uuid = "a2441757-f6aa-5fb2-8edb-039e3f45d037"
 version = "0.9.2"
 
 [[DataStructures]]
-deps = ["InteractiveUtils", "OrderedCollections", "Random", "Serialization", "Test"]
-git-tree-sha1 = "ca971f03e146cf144a9e2f2ce59674f5bf0e8038"
+deps = ["InteractiveUtils", "OrderedCollections"]
+git-tree-sha1 = "0809951a1774dc724da22d26e4289bbaab77809a"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.15.0"
+version = "0.17.0"
 
 [[Dates]]
 deps = ["Printf"]
@@ -64,10 +64,10 @@ deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[FFTW]]
-deps = ["AbstractFFTs", "BinaryProvider", "Compat", "Conda", "Libdl", "LinearAlgebra", "Reexport", "Test"]
-git-tree-sha1 = "29cda58afbf62f35b1a094882ad6c745a47b2eaa"
+deps = ["AbstractFFTs", "BinaryProvider", "Conda", "Libdl", "LinearAlgebra", "Reexport", "Test"]
+git-tree-sha1 = "e1a479d3c972f20c9a70563eec740bbfc786f515"
 uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
-version = "0.2.4"
+version = "0.3.0"
 
 [[FileIO]]
 deps = ["Pkg"]
@@ -77,9 +77,9 @@ version = "1.0.7"
 
 [[HTTP]]
 deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"]
-git-tree-sha1 = "854fad2a2b9cc6678f70ed15a65fc7e572056d39"
+git-tree-sha1 = "03ddc88af7f2d963fac5aa9f3ac8e11914d68a78"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "0.8.2"
+version = "0.8.4"
 
 [[IniFile]]
 deps = ["Test"]
@@ -104,10 +104,10 @@ uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
 version = "0.1.2"
 
 [[JSON]]
-deps = ["Dates", "Distributed", "Mmap", "Sockets", "Test", "Unicode"]
-git-tree-sha1 = "1f7a25b53ec67f5e9422f1f551ee216503f4a0fa"
+deps = ["Dates", "Mmap", "Parsers", "Unicode"]
+git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
-version = "0.20.0"
+version = "0.21.0"
 
 [[LibGit2]]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
@@ -146,6 +146,12 @@ git-tree-sha1 = "c4c13474d23c60d20a67b217f1d7f22a40edf8f1"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
 version = "1.1.0"
 
+[[Parsers]]
+deps = ["Dates", "Test"]
+git-tree-sha1 = "db2b35dedab3c0e46dc15996d170af07a5ab91c9"
+uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
+version = "0.3.6"
+
 [[Pkg]]
 deps = ["Dates", "LibGit2", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
@@ -213,9 +219,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[TranscodingStreams]]
 deps = ["Random", "Test"]
-git-tree-sha1 = "a25d8e5a28c3b1b06d3859f30757d43106791919"
+git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.4"
+version = "0.9.5"
 
 [[UUIDs]]
 deps = ["Random", "SHA"]

Project.toml

@@ -4,7 +4,7 @@ keywords = ["julia", "PDE", "partial differential equations", "spectral methods"
 license = "MIT"
 authors = ["Gregory L. Wagner <wagner.greg@gmail.com>", "Navid C. Constantinou <navidcy@gmail.com>"]
 description = "Tools for solving partial differential equations on periodic domains using Fourier-based pseudospectral methods."
-documentation = "https://fourierflows.github.io/FourierFlows.jl/latest/"
+documentation = "https://fourierflows.github.io/FourierFlows.jl/dev/"
 repository = "https://github.com/FourierFlows/FourierFlows.jl"
 version = "0.3.0"
 versions = ["0.0.1", "0.0.2", "0.1.0", "0.1.1", "0.1.2", "0.1.3", "0.2.0", "0.2.1", "0.2.2", "0.3.0"]

README.md

@@ -10,8 +10,8 @@
     <a href="https://FourierFlows.github.io/FourierFlows.jl/stable">
         <img src="https://img.shields.io/badge/docs-stable-blue.svg">
     </a>
-    <a href="https://FourierFlows.github.io/FourierFlows.jl/latest">
-        <img src="https://img.shields.io/badge/docs-latest-blue.svg">
+    <a href="https://FourierFlows.github.io/FourierFlows.jl/dev">
+        <img src="https://img.shields.io/badge/docs-dev-blue.svg">
     </a>
     <a href="https://coveralls.io/github/FourierFlows/FourierFlows.jl?branch=master">
         <img src="https://coveralls.io/repos/github/FourierFlows/FourierFlows.jl/badge.svg?branch=master" title="coveralls">

docs/Project.toml

@@ -3,4 +3,4 @@ Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 FourierFlows = "2aec4490-903f-5c70-9b11-9bed06a700e1"
 
 [compat]
-Documenter = "~0.20"
+Documenter = "~0.22"

docs/make.jl

@@ -9,9 +9,10 @@ using
 
 makedocs(
    modules = [FourierFlows],
-   doctest = false, clean = true,
+   doctest = false,
+     clean = true,
  checkdocs = :all,
-    format = :html,
+    format = Documenter.HTML(prettyurls = get(ENV, "CI", nothing) == "true"),
    authors = "Gregory L. Wagner and Navid C. Constantinou",
   sitename = "FourierFlows.jl",
      pages = Any[

docs/src/forcing.md

@@ -358,9 +358,9 @@ We want now to transfer all the knowledge we got from the previous sections to P
 
 which is also equivalently written as:
 
-\begin{equation}
-\dd \nabla^2\psi_t(\bx) =  -\mu \nabla^2\psi_t(\bx) \dd t + \sqrt{\sigma} \dd W_t(\bx)
-\end{equation}
+```math
+\dd \nabla^2\psi_{t}(\bx) = -\mu \nabla^2 \psi_{t} (\bx) \dd t + \sqrt{\sigma} \dd W_{t} (\bx) \per
+```
 
 The form \eqref{eq:PDEcont} is the continuous version understood in the Stratonovich interpretation
 (similar to \eqref{eq:OUcont}). Thus, forcing $\xi$ obeys now: