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1 | 1 | format-version: 1.2
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2 |
| -data-version: 4.1.199 |
| 2 | +data-version: 4.1.200 |
3 | 3 | date: 25:07:2025 21:40
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4 |
| -saved-by: Wout Bittremieux |
| 4 | +saved-by: Joshua Klein |
5 | 5 | default-namespace: MS
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6 | 6 | namespace-id-rule: * MS:$sequence(7,0,9999999)$
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7 | 7 | namespace-id-rule: * PEFF:$sequence(7,0,9999999)$
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@@ -8496,14 +8496,6 @@ def: "Cleavage agent Trypsin/P." [PSI:PI]
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8496 | 8496 | is_a: MS:1001045 ! cleavage agent name
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8497 | 8497 | relationship: has_regexp MS:1001339 ! (?<=[KR])
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8498 | 8498 |
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8499 |
| -[Term] |
8500 |
| -id: MS:1003434 |
8501 |
| -name: AlphaLP |
8502 |
| -def: "A serine protease that hydrolyzes peptide bonds at the C-terminus of threonine, alanine, serine, and valine. (EC:3.4.21.12)" [DOI:10.1038/228438a0, DOI:10.1021/bi00445a015] |
8503 |
| -is_a: MS:1001045 ! cleavage agent name |
8504 |
| -synonym: "alpha-lytic endopeptidase" EXACT [] |
8505 |
| -synonym: "alpha-lytic protease" EXACT [] |
8506 |
| -relationship: has_regexp MS:1003435 ! (?<=[TASV]) |
8507 | 8499 |
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8508 | 8500 | [Term]
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8509 | 8501 | id: MS:1001314
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@@ -12875,12 +12867,6 @@ name: (?<=W)
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12875 | 12867 | def: "Regular expression for 2-iodobenzoate." [PSI:PI]
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12876 | 12868 | is_a: MS:1001180 ! Cleavage agent regular expression
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12877 | 12869 |
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12878 |
| -[Term] |
12879 |
| -id: MS:1003435 |
12880 |
| -name: (?<=[TSAV]) |
12881 |
| -def: "Regular expression for alphaLP." [PSI:PI] |
12882 |
| -is_a: MS:1001180 ! Cleavage agent regular expression |
12883 |
| - |
12884 | 12870 | [Term]
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12885 | 12871 | id: MS:1001961
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12886 | 12872 | name: peptide spectrum match scoring algorithm
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@@ -19772,6 +19758,12 @@ name: Q Exactive Focus
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19772 | 19758 | def: "Q Exactive Focus Hybrid Quadrupole-Orbitrap Mass Spectrometer." [PSI:PI]
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19773 | 19759 | is_a: MS:1000494 ! Thermo Scientific instrument model
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19774 | 19760 |
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| 19761 | +[Term] |
| 19762 | +id: MS:1002994 |
| 19763 | +name: Orbitrap Excedion Pro |
| 19764 | +def: "Thermo Scientific Orbitrap Excedion Pro." [PSI:MS] |
| 19765 | +is_a: MS:1000494 ! Thermo Scientific instrument model |
| 19766 | + |
19775 | 19767 | [Term]
|
19776 | 19768 | id: MS:1002995
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19777 | 19769 | name: Andromeda:PEP
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@@ -22768,6 +22760,21 @@ is_a: MS:1001143 ! PSM-level search engine specific statistic
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22768 | 22760 | relationship: has_order MS:1002108 ! higher score better
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22769 | 22761 | relationship: has_value_type xsd:double ! The allowed value-type for this CV term
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22770 | 22762 |
|
| 22763 | +[Term] |
| 22764 | +id: MS:1003434 |
| 22765 | +name: AlphaLP |
| 22766 | +def: "A serine protease that hydrolyzes peptide bonds at the C-terminus of threonine, alanine, serine, and valine. (EC:3.4.21.12)" [DOI:10.1038/228438a0, DOI:10.1021/bi00445a015] |
| 22767 | +is_a: MS:1001045 ! cleavage agent name |
| 22768 | +synonym: "alpha-lytic endopeptidase" EXACT [] |
| 22769 | +synonym: "alpha-lytic protease" EXACT [] |
| 22770 | +relationship: has_regexp MS:1003435 ! (?<=[TASV]) |
| 22771 | + |
| 22772 | +[Term] |
| 22773 | +id: MS:1003435 |
| 22774 | +name: (?<=[TSAV]) |
| 22775 | +def: "Regular expression for alphaLP." [PSI:PI] |
| 22776 | +is_a: MS:1001180 ! Cleavage agent regular expression |
| 22777 | + |
22771 | 22778 | [Term]
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22772 | 22779 | id: MS:1003437
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22773 | 22780 | name: lowest observed ion mobility
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