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feature: sort identifiers, add "Orbitrap Excedion Pro" (#399)
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psi-ms.obo

Lines changed: 23 additions & 16 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
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format-version: 1.2
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data-version: 4.1.199
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data-version: 4.1.200
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date: 25:07:2025 21:40
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saved-by: Wout Bittremieux
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saved-by: Joshua Klein
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default-namespace: MS
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namespace-id-rule: * MS:$sequence(7,0,9999999)$
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namespace-id-rule: * PEFF:$sequence(7,0,9999999)$
@@ -8496,14 +8496,6 @@ def: "Cleavage agent Trypsin/P." [PSI:PI]
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is_a: MS:1001045 ! cleavage agent name
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relationship: has_regexp MS:1001339 ! (?<=[KR])
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[Term]
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id: MS:1003434
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name: AlphaLP
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def: "A serine protease that hydrolyzes peptide bonds at the C-terminus of threonine, alanine, serine, and valine. (EC:3.4.21.12)" [DOI:10.1038/228438a0, DOI:10.1021/bi00445a015]
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is_a: MS:1001045 ! cleavage agent name
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synonym: "alpha-lytic endopeptidase" EXACT []
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synonym: "alpha-lytic protease" EXACT []
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relationship: has_regexp MS:1003435 ! (?<=[TASV])
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[Term]
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id: MS:1001314
@@ -12875,12 +12867,6 @@ name: (?<=W)
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def: "Regular expression for 2-iodobenzoate." [PSI:PI]
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is_a: MS:1001180 ! Cleavage agent regular expression
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[Term]
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id: MS:1003435
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name: (?<=[TSAV])
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def: "Regular expression for alphaLP." [PSI:PI]
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is_a: MS:1001180 ! Cleavage agent regular expression
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[Term]
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id: MS:1001961
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name: peptide spectrum match scoring algorithm
@@ -19772,6 +19758,12 @@ name: Q Exactive Focus
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def: "Q Exactive Focus Hybrid Quadrupole-Orbitrap Mass Spectrometer." [PSI:PI]
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is_a: MS:1000494 ! Thermo Scientific instrument model
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[Term]
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id: MS:1002994
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name: Orbitrap Excedion Pro
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def: "Thermo Scientific Orbitrap Excedion Pro." [PSI:MS]
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is_a: MS:1000494 ! Thermo Scientific instrument model
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[Term]
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id: MS:1002995
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name: Andromeda:PEP
@@ -22768,6 +22760,21 @@ is_a: MS:1001143 ! PSM-level search engine specific statistic
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relationship: has_order MS:1002108 ! higher score better
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relationship: has_value_type xsd:double ! The allowed value-type for this CV term
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22763+
[Term]
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id: MS:1003434
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name: AlphaLP
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def: "A serine protease that hydrolyzes peptide bonds at the C-terminus of threonine, alanine, serine, and valine. (EC:3.4.21.12)" [DOI:10.1038/228438a0, DOI:10.1021/bi00445a015]
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is_a: MS:1001045 ! cleavage agent name
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synonym: "alpha-lytic endopeptidase" EXACT []
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synonym: "alpha-lytic protease" EXACT []
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relationship: has_regexp MS:1003435 ! (?<=[TASV])
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[Term]
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id: MS:1003435
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name: (?<=[TSAV])
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def: "Regular expression for alphaLP." [PSI:PI]
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is_a: MS:1001180 ! Cleavage agent regular expression
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[Term]
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id: MS:1003437
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name: lowest observed ion mobility

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