cleaning && adding necessary new files

Author: Javier Garcia Ordonez

{{cookiecutter.project_slug}}/.osparc/metadata.yml

@@ -17,6 +17,7 @@ inputs:
     label: input_{{ i+1 }}_label
     description: The input {{ i+1 }} description
     type: string
+    # allowed input / output types are "string", "number", "bool", "data:*/*"
     defaultValue: some_value(optional)
     fileToKeyMap:
       somefilename.ext: input_{{ i+1 }}
@@ -28,6 +29,7 @@ outputs:
     label: output_{{ i+1 }}_label
     description: The input {{ i+1 }} description
     type: string
+    # allowed input / output types are "string", "number", "bool", "data:*/*"
     fileToKeyMap:
       somefilename.ext: output_{{ i+1 }}
   {% endfor %}

{{cookiecutter.project_slug}}/.osparc/runtime.yml

@@ -7,7 +7,6 @@ settings:
   - name: Resources
     type: Resources
     value:
-      Limits:
+      Limits: # TODO Default resource limits. Change if necessary.
         NanoCPUs: 1000000000 # 100% of CPU cycles on 1 CPU 
-        MemoryBytes: 2147483648 # 2 Gigabytes
-
+        MemoryBytes: 2147483648 # 2 Gigabytes

{{cookiecutter.project_slug}}/docker-compose-local.yml

@@ -0,0 +1,7 @@
+version: '3.7'
+services:
+  {{ cookiecutter.project_slug }}:
+    image: simcore/services/{%- if cookiecutter.project_type == "computational" -%}comp{%- elif cookiecutter.project_type == "dynamic" -%}dynamic{%- endif -%}/{{ cookiecutter.project_name.lower().replace(' ', '-') }}:{{ cookiecutter.version }}
+    volumes:
+      - ${PWD}/validation/input:/input
+      - ${PWD}/validation/output:/output

{{cookiecutter.project_slug}}/service.cli/execute.sh

@@ -4,33 +4,27 @@ set -o errexit
 set -o nounset
 IFS=$(printf '\n\t')
 
-cd /home/scu/{{ cookiecutter.project_package_name }}
+cd /home/scu/src/{{ cookiecutter.project_package_name }}
 
 echo "starting service as"
 echo   User    : "$(id "$(whoami)")"
 echo   Workdir : "$(pwd)"
 echo "..."
 echo
 # ----------------------------------------------------------------
-# This script shall be modified according to the needs in order to run the service
-# The inputs defined in ${INPUT_FOLDER}/inputs.json are available as env variables by their key in capital letters
-# For example: input_1 -> $INPUT_1
+# This script shall be modified according to the needs in order to run the service. You can use the inputs in ${INPUT_FOLDER}
+# then retrieve the output and move it to the $OUTPUT_FOLDER as defined in the output labels
+# For example: cp output.csv $OUTPUT_FOLDER or to $OUTPUT_FOLDER/outputs.json using jq
+# TODO: Replace following
 
 # put the code to execute the service here
 # For example:
 env
 ls -al "${INPUT_FOLDER}"
+# or for example, to execute a python script on some input data:
+env
+python3 myscript.py -i path/to/input_data/input_file.txt
+cp output_file.json "${OUTPUT_FOLDER}"/outputs.json 
 
-# then retrieve the output and move it to the $OUTPUT_FOLDER
-# as defined in the output labels
-# For example: cp output.csv $OUTPUT_FOLDER or to $OUTPUT_FOLDER/outputs.json using jq
-#TODO: Replace following
-cat > "${OUTPUT_FOLDER}"/outputs.json << EOF
-{
-{%- for i in range(cookiecutter.number_of_outputs|int) -%}
-{%- if i > 0 -%},{%- endif %}
-    "output_{{ i+1 }}":"some_stuff"
-{%- endfor %}
-}
 EOF
 

{{cookiecutter.project_slug}}/service.cli/run

@@ -0,0 +1,16 @@
+
+#!/bin/sh
+#---------------------------------------------------------------
+# AUTO-GENERATED CODE, do not modify this will be overwritten!!!
+#---------------------------------------------------------------
+# shell strict mode:
+set -o errexit
+set -o nounset
+IFS=$(printf '\n\t')
+cd "$(dirname "$0")"
+    
+INPUT_1=$INPUT_FOLDER/input.zip
+export INPUT_1
+
+exec execute.sh
+