0.0.1

Author: IbrahimTanyalcin

README.md

@@ -1,4 +1,10 @@
-# I-PV <img src="./logo.png" width='70' height='auto' style='float:right;'>
+# I-PV <img src="https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/logo.png?raw=true" width='70' height='auto' style='float:right;'>
+
+[![NPM](https://nodei.co/npm/ibowankenobi-i-pv.png)](https://nodei.co/npm/ibowankenobi-i-pv/)
+
+## Read the article
+
+[![link](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/i-pv_article.jpeg)](https://academic.oup.com/bioinformatics/article/32/3/447/1743584)
 
 ## Interactive Protein Sequence VIsualization/Viewer
 
@@ -14,6 +20,8 @@ post the files in the datatracks folder as supplementary.
 
 In I-PV is designed to convey complex proteomics information to the audience in an interesting format. 
 
-Below is a [sample output](http://i-pv.org/EGFR.html).
+Below are some [sample outputs](http://i-pv.org/EGFR.html).
+
+![alt tag](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/sample.png?raw=true)
 
-![alt tag](./sample.png)
+![alt tag 2](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/sample2.png?raw=true)

i-pv/ReadMe.md

@@ -40,6 +40,8 @@ Suppose you exited the i-pv after generation of circos datatracks. And then you
 >
 > 👉 Use circos version 0.67-7. <br>
 >
+> 👉 If you are using perl 5.22 use the provided `circos-0.67-7_perl_5_22` circos distribution. If you are using perl 5.26, use the other. The only difference between these packages are the `SVG.pm` regex expressions.
+>
 > 👉 If on windows, versions of circos newer than 0.67-7 will give an error, replace the circos file in the *./bin folder* of circos with the same file coming from 0.67-7 version. <br>
 >
 > 👉 If you use these newer versions, a compulsory white background is added. So when your output from i-pv is generated, go to `./Output` folder and open the html file, search for a group with the id of `bg` and remove it. This should solve the white background issue. <br>

img/i-pv_article.jpeg

@@ -1,6 +1,6 @@
 {
   "name": "ibowankenobi-i-pv",
-  "version": "0.0.0",
+  "version": "0.0.1",
   "org_ipv": {
     "version": "1.46"
   },
@@ -26,9 +26,10 @@
     "setGit": "npm run gitAddAll && npm run gitCommit && npm run gitTag && npm run gitPush && npm run gitPushTags",
     "publishRest": "npm run setGit && npm publish",
     "publishPatch": "npm run bumpPatch && npm run publishRest",
+    "publishPatchNPM": "npm run bumpPatchNPM && npm run publishRest",
     "publishMinor": "npm run bumpMinor && npm run publishRest",
     "publishMajor": "npm run bumpMajor && npm run publishRest",
-	"syncMirror": "cross-env-shell node ./util/syncMirror.js"
+    "syncMirror": "cross-env-shell node ./util/syncMirror.js"
   },
   "keywords": [
     "interactive",