Skip to content

Commit 8c116bb

Browse files
committed
I-PV: interactive protein sequence/feature viewer
First, head on to http://i-pv.org/ipv_minimal.html to have an idea about what I-PV is and what it can do for you. This folder contains the necessary files to run I-PV, a circos module for interactive sequence visualization/viewer. Download the folder into any location on your disk, then specify the correct path on SNPtoAA._43pl script at line 870 to the version of circos you want to use. Run the script and follow the instructions.
1 parent d9cb287 commit 8c116bb

31 files changed

+50287
-0
lines changed

1_43_2/ipv/ReadMe.txt

Lines changed: 14 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,14 @@
1+
1. Extract the archive anywhere in your computer.
2+
2. Open ./SNPtoAA_43.pl in ./script folder and move to line 870. Search for a variable called $circos
3+
3. Change the value of the $circos variable to the path to your version of circos script file. You are required to do this only the first time you are using i-PV.
4+
4. Place the input files in the input folder.
5+
5. Run the script SNPtoAA_43.pl in the script folder.
6+
6. Follow the onscreen instructions.
7+
7. Your output will be located in the ./Output directory.
8+
8. You only need the html file, the rest you can delete.
9+
9. You can now send this html file to your colleagues or generate a static figure.
10+
11+
Note: Do not change the files in the ./template folder.
12+
You can watch the tutorial videos online at i-pv.org
13+
14+
***The examples belong to version 1.43. If you want to see the difference, you will have to regenerate the figures with this version.

0 commit comments

Comments
 (0)