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I noticed that the csv output for week 1 for 2019 has blank values for the "references" field for all WKUs. I checked randomly for references for some of them on https://portal.uspto.gov/pair/PublicPair using their patent number as the search field and found the latest reference document on the "Display References" tab shows multiple references for these patents. Then I compared the contents for week 1 of 2012. The csv output for this shows populated fields for references for the patents issued and these matched with the information on the PublicPair portal for a randomly chosen patents.
Can you please execute an iteration with 2019 and 2012 week 1 data and check the reason for the references mismatch between the patentr output and the PublicPair portal.