remove Delimi and Download dependencies (#87)

* remove Delimi and Download dependencies

* update cache ci

* remove using downloads

* add delimited files

Author: Datseris

.github/workflows/ci.yml

@@ -34,7 +34,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
+      - uses: actions/cache@v4
         env:
           cache-name: cache-artifacts
         with:

Project.toml

@@ -1,11 +1,9 @@
 name = "TransitionsInTimeseries"
 uuid = "5f5b98ec-1183-43e0-887a-12fdc55c52f7"
 authors = ["Jan Swierczek-Jereczek <jan.jereczek@gmail.com>", "George Datseris <datseris.george@gmail.com>"]
-version = "0.1.4"
+version = "0.2.0"
 
 [deps]
-DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
-Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
 HypothesisTests = "09f84164-cd44-5f33-b23f-e6b0d136a0d5"
 InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
@@ -24,8 +22,6 @@ Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
 TransitionVisualizations = "Makie"
 
 [compat]
-DelimitedFiles = "1"
-Downloads = "1"
 FFTW = "^1.6"
 HypothesisTests = "0.11"
 InteractiveUtils = "1"

docs/src/api.md

@@ -122,12 +122,6 @@ windowmap
 windowmap!
 ```
 
-## Load data
-
-```@docs
-load_linear_vs_doublewell()
-```
-
 ## Visualization
 
 ```@docs

docs/src/tutorial.jl

@@ -30,8 +30,14 @@ with $x_{l}$ the state of the linear model, $x_{nl}$ the state of the bistable m
 =#
 
 using TransitionsInTimeseries, CairoMakie
+using Downloads, DelimitedFiles
+
+## load some data
+url = "https://raw.githubusercontent.com/JuliaDynamics/JuliaDynamics/master/"*
+"timeseries/linear_vs_doublewell.csv"
+data = readdlm(Downloads.download(url), ',', Float64, skipstart = 1)
+t, x_linear, x_nlinear = view(data, :, 1), view(data, :, 2), view(data, :, 3)
 
-t, x_linear, x_nlinear = load_linear_vs_doublewell()
 fig, ax = lines(t, x_linear)
 lines!(ax, t, x_nlinear)
 ax.title = "raw data"
@@ -194,9 +200,9 @@ The following blocks illustrate how the above extensive example is re-created in
 
 using TransitionsInTimeseries, CairoMakie
 
-t, x_linear, x_nlinear = load_linear_vs_doublewell()
 
 ## input timeseries and time
+t, x_linear, x_nlinear
 input = x_nl_fluct = diff(x_nlinear)
 t = t[2:end]
 

docs/src/tutorial.md

@@ -9,8 +9,6 @@ end TransitionsInTimeseries
 
 using LinearAlgebra
 using Random
-using Downloads
-using DelimitedFiles
 using InteractiveUtils
 using FFTW
 
@@ -67,7 +65,4 @@ export SlopeChangeConfig, SlopeChangeResults, SlopeChangeSignificance
 export isequispaced, equispaced_step
 export default_window_width
 
-# load_data.jl
-export load_linear_vs_doublewell
-
 end # module TransitionsInTimeseries

src/TransitionsInTimeseries.jl

@@ -1,13 +0,0 @@
-"""
-
-    load_linear_vs_doublewell()
-
-Load prototypical data from a linear and a double-well model to test some indicators.
-"""
-function load_linear_vs_doublewell()
-    url = "https://raw.githubusercontent.com/JuliaDynamics/JuliaDynamics/master/"*
-        "timeseries/linear_vs_doublewell.csv"
-    tmp = Downloads.download(url)
-    data = readdlm(tmp, ',', Float64, skipstart = 1)
-    return view(data, :, 1), view(data, :, 2), view(data, :, 3) # t, xlin, xnlin
-end

src/misc/load_data.jl

@@ -1,5 +1,19 @@
 using Test
 
+"""
+
+    load_linear_vs_doublewell()
+
+Load prototypical data from a linear and a double-well model to test some indicators.
+"""
+function load_linear_vs_doublewell()
+    url = "https://raw.githubusercontent.com/JuliaDynamics/JuliaDynamics/master/"*
+        "timeseries/linear_vs_doublewell.csv"
+    tmp = Downloads.download(url)
+    data = readdlm(tmp, ',', Float64, skipstart = 1)
+    return view(data, :, 1), view(data, :, 2), view(data, :, 3) # t, xlin, xnlin
+end
+
 defaultname(file) = uppercasefirst(replace(splitext(basename(file))[1], '_' => ' '))
 testfile(file, testname=defaultname(file)) = @testset "$testname" begin; include(file); end