Converting to DiaNN .tsv library format #649
Unanswered
Arthfael
asked this question in
Questions / Support
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Uh oh!
There was an error while loading. Please reload this page.
-
We would be interested in converting the HDF libraries created by alphaDIA to DiaNN-like .tsv libraries. Is there any way to activate an option to output such a file format?
Alternatively, I would perform the conversion myself, except I am afraid that I may have too little information in the file:
I have managed to parse a HDF library file, but am rather confused as to the 2 fragment tables, fragment_mz_df and fragment_intensity_df: each has only 4 columns, if I read correctly, the first table contains the m/z for 4 fragment ions (2 each b and y), and the other the corresponding ion's intensity, correct? Why not include more fragment ions, is 2 each b and y really enough? Is there a way to force alphaDIA to include more fragments?
In addition, each precursor has 4 columns named i_0 to i_3: what are these?
Beta Was this translation helpful? Give feedback.
All reactions