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Chore: untrack ignored content (paper/, src/Mera.jl, visualization/) to align with .gitignore

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paper
- paper.bib
- paper.md
src
- Mera.jl
- functions/visualization
  - triangular_heatmap_example.jl
  - triangular_heatmap_plots.jl

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`‎paper/paper.bib`

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`‎paper/paper.md`

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