Skip to content

Commit 6bdbe33

Browse files
authored
README: improved time and memory estimates.
1 parent a3f609f commit 6bdbe33

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

README.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -41,7 +41,7 @@ KmerCamel🐫 implements two different algorithms for computing the superstring:
4141
global greedy and local greedy. Global greedy produces more compact superstrings and therefore is the default option,
4242
but local greedy requires less memory and hence can be more suitable in use cases where memory is the main limitation.
4343

44-
To compute masked superstrings takes about 4-10s / 1M k-mers, which means about 5h to compute masked superstrings for the human genome.
44+
To compute masked superstrings takes about 4-6s / 1M k-mers, which means about 3h to compute masked superstrings for the human genome. The memory consumption on human genome is about 115 GB.
4545

4646
All algorithms can be used to either work in the unidirectional model or in the bidirectional model
4747
(i.e. treat $k$-mer and its reverse complement as the same; in this case either of them appears in the result).

0 commit comments

Comments
 (0)