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README.md

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# causal-priors-extractor ![build status](https://github.com/pathwayanddataanalysis/causal-priors-extractor/workflows/build/badge.svg)
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This project extracts causal priors from Pathway Commons database to use in CausalPath.
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##Inputs
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## Inputs
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1. A BioPAX file downloaded from Pathway Commons. See https://www.pathwaycommons.org/archives/PC2/
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2. A blacklist file that provides a classification for ubiquitous small molecules. This file appears in the name "blacklist.txt" in the Pathway Commons archives.
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##Output
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## Output
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Causal priors as a SIF file.
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##How to build with Maven
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## How to build with Maven
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```
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git pull https://github.com/PathwayAndDataAnalysis/causal-priors-extractor.git
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cd causal-priors-extractor

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