Merge branch 'main' into dependabot/github_actions/crate-ci/typos-1.31.1

Author: oameye

.github/workflows/CI.yml renamed to .github/workflows/Tests.yml

@@ -1,4 +1,4 @@
-name: CI
+name: Tests
 on:
   push:
     tags:
@@ -13,6 +13,10 @@ concurrency:
   # Cancel intermediate builds: only if it is a pull request build.
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
+
+env:
+  JULIA_NUM_THREADS: 11
+
 jobs:
   test:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
@@ -22,6 +26,7 @@ jobs:
       actions: write
       contents: read
     strategy:
+      fail-fast: false
       matrix:
         version:
           - 'pre'

Project.toml

@@ -21,7 +21,7 @@ Test = "1.10"
 OrderedCollections = "1.8"
 Aqua = "0.8.11"
 ExplicitImports = "1.11"
-JET = "0.9.18"
+JET = "0.9.18, 0.10.0"
 CheckConcreteStructs = "0.1.0"
 
 [extras]

docs/make.jl

@@ -16,16 +16,16 @@ makedocs(;
     clean=true,
     linkcheck=true,
     warnonly=:missing_docs,
-    draft=!CI,
+    draft=(!CI),
     doctest=false,  # We test it in the CI, no need to run it here
 )
 
 if CI
     deploydocs(;
         repo="github.com/QuantumEngineeredSystems/QuestBase.jl",
-        # devbranch="main",
-        # target="build",
-        # branch="gh-pages",
+        devbranch="main",
+        target="build",
+        branch="gh-pages",
         push_preview=true,
     )
 end

src/DifferentialEquation.jl

@@ -90,8 +90,9 @@ $(TYPEDSIGNATURES)
 
 Return the dependent variables of `diff_eom`.
 """
-Symbolics.get_variables(diff_eom::DifferentialEquation)::Vector{Num} =
-    collect(keys(diff_eom.equations))
+Symbolics.get_variables(diff_eom::DifferentialEquation)::Vector{Num} = collect(
+    keys(diff_eom.equations)
+)
 
 """
 $(TYPEDSIGNATURES)
@@ -100,8 +101,9 @@ Check if all equations in `diff_eom` are harmonic with respect to `t`. The funct
 differential equation system `diff_eom` and a variable `t`, and returns `true` if all equations
 are harmonic with respect to `t`, otherwise it returns `false`.
 """
-QuestBase.is_harmonic(diff_eom::DifferentialEquation, t::Num)::Bool =
-    all([is_harmonic(eq, t) for eq in values(diff_eom.equations)])
+QuestBase.is_harmonic(diff_eom::DifferentialEquation, t::Num)::Bool = all([
+    is_harmonic(eq, t) for eq in values(diff_eom.equations)
+])
 
 """
 $(TYPEDSIGNATURES)

src/HarmonicEquation.jl

@@ -21,14 +21,14 @@ mutable struct HarmonicEquation
     # use a self-referential constructor with _parameters
     function HarmonicEquation(equations, variables, nat_eq)
         return (
-            x = new(
+            x=new(
                 equations,
                 variables,
                 Num[],
                 nat_eq,
                 dummy_symbolic_Jacobian(length(variables)),
             );
-            x.parameters = _parameters(x);
+            x.parameters=_parameters(x);
             x
         )
     end

src/HarmonicVariable.jl

@@ -97,13 +97,15 @@ function QuestBase.substitute_all(vars::Vector{HarmonicVariable}, rules)
 end
 
 "Returns the symbols of a `HarmonicVariable`."
-get_variables_nums(vars::Vector{Num}) =
+function get_variables_nums(vars::Vector{Num})
     unique(flatten([Num.(get_variables(x)) for x in vars]))
+end
 
 Symbolics.get_variables(var::HarmonicVariable)::Num = Num(first(get_variables(var.symbol)))
 
-Base.isequal(v1::HarmonicVariable, v2::HarmonicVariable)::Bool =
-    isequal(v1.symbol, v2.symbol)
+Base.isequal(v1::HarmonicVariable, v2::HarmonicVariable)::Bool = isequal(
+    v1.symbol, v2.symbol
+)
 
 "The derivative of f w.r.t. x of degree deg"
 function d(f::Num, x::Num, deg=1)::Num