add Dockerfile for snpEff

Author: MaxUlysse

snpeff/Dockerfile

@@ -0,0 +1,26 @@
+FROM openjdk:8
+
+LABEL author="Maxime Garcia" \
+description="snpEff 4.2 image for use in CAW" \
+maintainer="maxime.garcia@scilifelab.se"
+
+#Install libraries
+RUN apt-get update && apt-get install -y --no-install-recommends \
+build-essential \
+ca-certificates \
+curl \
+git \
+libncursesw5-dev \
+libncurses5-dev \
+make \
+zlib1g-dev \
+&& rm -rf /var/lib/apt/lists/*
+
+#Setup ENV variables
+ENV PATH="/opt/snpEff:$PATH" \
+SNPEFF_BIN="snpEff_v4_2_core.zip"
+
+#Install snpEff
+RUN curl -fsSL https://downloads.sourceforge.net/project/snpeff/$SNPEFF_BIN -o /opt/$SNPEFF_BIN \
+&& unzip /opt/$SNPEFF_BIN -d /opt/ \
+&& rm /opt/$SNPEFF_BIN