Merge pull request #118 from ewels/master

HOTFIX: StringTie: Fix strandedness bug

Author: vezzi

CHANGELOG.md

@@ -1,5 +1,8 @@
 # NGI-RNAseq
 
+## [1.0.3](https://github.com/SciLifeLab/NGI-RNAseq/releases/tag/1.0.1) - 2017-04-19
+Hotfix to fix minor bug affecting strandedness for StringTie run.
+
 ## [1.0.2](https://github.com/SciLifeLab/NGI-RNAseq/releases/tag/1.0.2) - 2017-04-11
 A couple of tweaks to help the pipeline in production:
 

main.nf

@@ -22,7 +22,7 @@ vim: syntax=groovy
  */
 
 // Pipeline version
-version = '1.0.2'
+version = '1.0.3'
 
 // Configurable variables
 params.project = false
@@ -798,7 +798,7 @@ process stringtieFPKM {
     def StringTie_direction = ''
     if (params.forward_stranded && !params.unstranded){
         StringTie_direction = "--fr"
-    } else if (!params.reverse_stranded && !params.unstranded){
+    } else if (params.reverse_stranded && !params.unstranded){
         StringTie_direction = "--rf"
     }
     """