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pkg> update failed #2821

@dtxl

Description

@dtxl

Describe the bug 🐞

macOS 15.5, Julia 1.11.6, made the daily pkg> update

Error & Stacktrace ⚠️

The output is

Updating registry at `~/.julia/registries/General.toml`

Installed OrdinaryDiffEqFIRK ────────────────── v1.14.0
Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.3.0
Installed OrdinaryDiffEqFunctionMap ─────────── v1.3.0
Installed OrdinaryDiffEqExplicitRK ──────────── v1.2.0
Installed OrdinaryDiffEqExtrapolation ───────── v1.6.0
Installed OrdinaryDiffEqLinear ──────────────── v1.4.0
Installed OrdinaryDiffEqExponentialRK ───────── v1.6.0
Installed OrdinaryDiffEqCore ────────────────── v1.27.0
Installed OrdinaryDiffEqBDF ─────────────────── v1.8.0
Installed OrdinaryDiffEqIMEXMultistep ───────── v1.5.0
Installed OrdinaryDiffEqHighOrderRK ─────────── v1.3.0
Installed OrdinaryDiffEqDefault ─────────────── v1.6.0
Installed OrdinaryDiffEqDifferentiation ─────── v1.11.0
Installed OrdinaryDiffEqFeagin ──────────────── v1.2.0
No Changes to ~/.julia/environments/v1.11/Project.toml
Updating ~/.julia/environments/v1.11/Manifest.toml
[89bda076] ↑ OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 ⇒ v1.3.0
[6ad6398a] ↑ OrdinaryDiffEqBDF v1.7.0 ⇒ v1.8.0
[bbf590c4] ↑ OrdinaryDiffEqCore v1.26.2 ⇒ v1.27.0
[50262376] ↑ OrdinaryDiffEqDefault v1.5.0 ⇒ v1.6.0
[4302a76b] ↑ OrdinaryDiffEqDifferentiation v1.10.1 ⇒ v1.11.0
[9286f039] ↑ OrdinaryDiffEqExplicitRK v1.1.0 ⇒ v1.2.0
[e0540318] ↑ OrdinaryDiffEqExponentialRK v1.5.0 ⇒ v1.6.0
[becaefa8] ↑ OrdinaryDiffEqExtrapolation v1.5.0 ⇒ v1.6.0
[5960d6e9] ↑ OrdinaryDiffEqFIRK v1.13.0 ⇒ v1.14.0
[101fe9f7] ↑ OrdinaryDiffEqFeagin v1.1.0 ⇒ v1.2.0
[d3585ca7] ↑ OrdinaryDiffEqFunctionMap v1.2.0 ⇒ v1.3.0
[d28bc4f8] ↑ OrdinaryDiffEqHighOrderRK v1.2.0 ⇒ v1.3.0
[9f002381] ↑ OrdinaryDiffEqIMEXMultistep v1.4.0 ⇒ v1.5.0
[521117fe] ↑ OrdinaryDiffEqLinear v1.3.0 ⇒ v1.4.0
Precompiling project...
✗ OrdinaryDiffEqRosenbrock
✗ OrdinaryDiffEqDefault
✗ OrdinaryDiffEq
✗ DelayDiffEq
✗ DifferentialEquations
30 dependencies successfully precompiled in 35 seconds. 532 already precompiled.
5 dependencies errored.
For a report of the errors see julia> err. To retry use pkg> precompile

The output of pkg> precompile is

(@v1.11) pkg> precompile
Precompiling project...
✗ OrdinaryDiffEqRosenbrock
✗ OrdinaryDiffEqDefault
✗ OrdinaryDiffEq
✗ DelayDiffEq
✗ DifferentialEquations
0 dependencies successfully precompiled in 18 seconds. 562 already precompiled.

ERROR: The following 2 direct dependencies failed to precompile:

DifferentialEquations

Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/Users/.../.julia/compiled/v1.11/DifferentialEquations/jl_2yY5ft".
WARNING: could not import OrdinaryDiffEqCore.recursivefill! into OrdinaryDiffEq
WARNING: could not import OrdinaryDiffEqCore.namify into OrdinaryDiffEqRosenbrock
┌ Warning: Replacing docs for OrdinaryDiffEqRosenbrock.Rosenbrock23 :: Union{} in module OrdinaryDiffEqRosenbrock
└ @ Base.Docs docs/Docs.jl:243
┌ Warning: Replacing docs for OrdinaryDiffEqRosenbrock.Rodas5P :: Union{} in module OrdinaryDiffEqRosenbrock
└ @ Base.Docs docs/Docs.jl:243
ERROR: LoadError: UndefVarError: namify not defined in OrdinaryDiffEqRosenbrock
Stacktrace:
[1] gen_algcache(cacheexpr::Expr, constcachename::Symbol, algname::Symbol, tabname::Symbol)
@ OrdinaryDiffEqRosenbrock ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/generic_rosenbrock.jl:213
[2] var"@ros2"(source::LineNumberNode, module::Module, part::Any)
@ OrdinaryDiffEqRosenbrock ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/generic_rosenbrock.jl:1238
[3] include(mod::Module, _path::String)
@ Base ./Base.jl:562
[4] include(x::String)
@ OrdinaryDiffEqRosenbrock ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/OrdinaryDiffEqRosenbrock.jl:1
[5] top-level scope
@ ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/OrdinaryDiffEqRosenbrock.jl:213
[6] include
@ ./Base.jl:562 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[8] top-level scope
@ stdin:6
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/rosenbrock_caches.jl:498
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/rosenbrock_caches.jl:498
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/OrdinaryDiffEqRosenbrock.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile OrdinaryDiffEqRosenbrock [43230ef6-c299-4910-a778-202eb28ce4ce] to "/Users/.../.julia/compiled/v1.11/OrdinaryDiffEqRosenbrock/jl_ml0lzo".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:562 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEq/Hdbut/src/OrdinaryDiffEq.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/Users/.../.julia/compiled/v1.11/OrdinaryDiffEq/jl_XzzGqk".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:562 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /Users/.../.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:1
in expression starting at stdin:6
OrdinaryDiffEq

Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/Users/.../.julia/compiled/v1.11/OrdinaryDiffEq/jl_O09kvI".
WARNING: could not import OrdinaryDiffEqCore.recursivefill! into OrdinaryDiffEq
WARNING: could not import OrdinaryDiffEqCore.namify into OrdinaryDiffEqRosenbrock
┌ Warning: Replacing docs for OrdinaryDiffEqRosenbrock.Rosenbrock23 :: Union{} in module OrdinaryDiffEqRosenbrock
└ @ Base.Docs docs/Docs.jl:243
┌ Warning: Replacing docs for OrdinaryDiffEqRosenbrock.Rodas5P :: Union{} in module OrdinaryDiffEqRosenbrock
└ @ Base.Docs docs/Docs.jl:243
ERROR: LoadError: UndefVarError: namify not defined in OrdinaryDiffEqRosenbrock
Stacktrace:
[1] gen_algcache(cacheexpr::Expr, constcachename::Symbol, algname::Symbol, tabname::Symbol)
@ OrdinaryDiffEqRosenbrock ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/generic_rosenbrock.jl:213
[2] var"@ros2"(source::LineNumberNode, module::Module, part::Any)
@ OrdinaryDiffEqRosenbrock ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/generic_rosenbrock.jl:1238
[3] include(mod::Module, _path::String)
@ Base ./Base.jl:562
[4] include(x::String)
@ OrdinaryDiffEqRosenbrock ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/OrdinaryDiffEqRosenbrock.jl:1
[5] top-level scope
@ ~/.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/OrdinaryDiffEqRosenbrock.jl:213
[6] include
@ ./Base.jl:562 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[8] top-level scope
@ stdin:6
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/rosenbrock_caches.jl:498
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/rosenbrock_caches.jl:498
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEqRosenbrock/FYndp/src/OrdinaryDiffEqRosenbrock.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile OrdinaryDiffEqRosenbrock [43230ef6-c299-4910-a778-202eb28ce4ce] to "/Users/.../.julia/compiled/v1.11/OrdinaryDiffEqRosenbrock/jl_U358sk".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:562 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /Users/.../.julia/packages/OrdinaryDiffEq/Hdbut/src/OrdinaryDiffEq.jl:1
in expression starting at stdin:6

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