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docs/source/baseplate2/baseplate2.rst

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@@ -53,7 +53,7 @@ distribution associated with them. More information on Powell lenses can be foun
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Zemax Simulation Setup Process
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______________________________
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Similarly to our methods used for designing our first iteration of our baseplate (link to page), we first start by
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Similarly to our methods used for designing our `first iteration of our baseplate <https://thedeanlab.github.io/altair/design_principles/design_process.html>`_, we first start by
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using basic magnification equations to select theoretical focal lengths of lenses that would be needed along our
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illumination path to form a light sheet with our desired physical characteristics. A basic schematic of what one of
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these powell-lens-based ALSM systems would look like is shown below in Figure (2).
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**Figure 3:** Conceptual setup of the ASLM-based Zemax simulations.
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We optimized our system similar in method to how we optimized our first system (link to page), where the general
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We optimized our system similar in method to how we `optimized our first system <https://thedeanlab.github.io/altair/design_principles/design_process.html>`_, where the general
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process is placing in each component individually into the simulation and optimizing for either collimation or
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focusing in a particular direction before adding in the subsequent element. In this first optimization process,
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the offset of the RFO was set to be 0, such that the reverse path reflection point was the exact focus position of
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this configuration also allows for the straightforward switching between ASLM and CT-ASLM capabilities by swapping
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L7, the illumination objective, and the sample chamber used.
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Going through the same process we detailed for our first baseplate iteration (insert link), we determined the
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Going through the same process we detailed for our first baseplate iteration `our first baseplate iteration <https://thedeanlab.github.io/altair/design_principles/design_process.html>`_, we determined the
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locations where holes on our baseplate would need to be to correctly position the optical components of all three of
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our potential illumination paths. Our final baseplate design for our second iteration of Altair is shown below in
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Figure 10.

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