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biosimulatorsdaemon
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Updating compiled documentation
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docs/_static/documentation_options.js

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var DOCUMENTATION_OPTIONS = {
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URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
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VERSION: '0.1.17',
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VERSION: '0.1.18',
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LANGUAGE: 'en',
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COLLAPSE_INDEX: false,
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BUILDER: 'html',

docs/about.html

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<head>
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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>About BioSimulators-tellurium &#8212; BioSimulators-tellurium 0.1.17 documentation</title>
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<title>About BioSimulators-tellurium &#8212; BioSimulators-tellurium 0.1.18 documentation</title>
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<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
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<link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
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<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>

docs/genindex.html

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<head>
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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>Index &#8212; BioSimulators-tellurium 0.1.17 documentation</title>
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<title>Index &#8212; BioSimulators-tellurium 0.1.18 documentation</title>
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<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
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<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
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<h1 id="index">Index</h1>
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<div class="genindex-jumpbox">
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<a href="#B"><strong>B</strong></a>
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<a href="#A"><strong>A</strong></a>
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| <a href="#B"><strong>B</strong></a>
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| <a href="#C"><strong>C</strong></a>
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| <a href="#E"><strong>E</strong></a>
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| <a href="#G"><strong>G</strong></a>
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| <a href="#M"><strong>M</strong></a>
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| <a href="#P"><strong>P</strong></a>
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| <a href="#R"><strong>R</strong></a>
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| <a href="#S"><strong>S</strong></a>
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| <a href="#T"><strong>T</strong></a>
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| <a href="#V"><strong>V</strong></a>
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</div>
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<h2 id="A">A</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PreprocesssedTask.algorithm_kisao_id">algorithm_kisao_id (biosimulators_tellurium.data_model.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id5">[1]</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PreprocesssedTask.algorithm_kisao_id">(biosimulators_tellurium.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id0">[1]</a>
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</li>
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</ul></li>
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</ul></td>
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</tr></table>
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<h2 id="B">B</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.SedmlInterpreter.biosimulators">biosimulators (biosimulators_tellurium.data_model.SedmlInterpreter attribute)</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.SedmlInterpreter.biosimulators">(biosimulators_tellurium.SedmlInterpreter attribute)</a>
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</li>
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</ul></li>
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<li>
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biosimulators_tellurium
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PlottingEngine.matplotlib">matplotlib (biosimulators_tellurium.data_model.PlottingEngine attribute)</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PlottingEngine.matplotlib">(biosimulators_tellurium.PlottingEngine attribute)</a>
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</li>
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</ul></li>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PreprocesssedTask.model_change_target_tellurium_id_map">model_change_target_tellurium_id_map (biosimulators_tellurium.data_model.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id6">[1]</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PreprocesssedTask.model_change_target_tellurium_id_map">(biosimulators_tellurium.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id1">[1]</a>
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</li>
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</ul></li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li>
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module
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PlottingEngine.plotly">plotly (biosimulators_tellurium.data_model.PlottingEngine attribute)</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PlottingEngine.plotly">(biosimulators_tellurium.PlottingEngine attribute)</a>
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</li>
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</ul></li>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.config.Config.plotting_engine">plotting_engine (biosimulators_tellurium.config.Config attribute)</a>
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</li>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PlottingEngine">PlottingEngine (class in biosimulators_tellurium)</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PlottingEngine">(class in biosimulators_tellurium.data_model)</a>
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</li>
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</ul></li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.config.Config.plotting_engine">plotting_engine (biosimulators_tellurium.config.Config attribute)</a>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.core.preprocess_sed_task">preprocess_sed_task() (in module biosimulators_tellurium.core)</a>
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</li>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PlottingEngine">PlottingEngine (class in biosimulators_tellurium.data_model)</a>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PreprocesssedTask">PreprocesssedTask (class in biosimulators_tellurium)</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PreprocesssedTask">(class in biosimulators_tellurium.data_model)</a>
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</li>
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</ul></li>
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</ul></td>
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</tr></table>
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<h2 id="R">R</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PreprocesssedTask.road_runner">road_runner (biosimulators_tellurium.data_model.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id7">[1]</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PreprocesssedTask.road_runner">(biosimulators_tellurium.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id2">[1]</a>
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</li>
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</ul></li>
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</ul></td>
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</tr></table>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.config.Config.sedml_interpreter">sedml_interpreter (biosimulators_tellurium.config.Config attribute)</a>
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</li>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.SedmlInterpreter">SedmlInterpreter (class in biosimulators_tellurium)</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.SedmlInterpreter">(class in biosimulators_tellurium.data_model)</a>
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</li>
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</ul></li>
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</ul></td>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.SedmlInterpreter">SedmlInterpreter (class in biosimulators_tellurium.data_model)</a>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PreprocesssedTask.solver">solver (biosimulators_tellurium.data_model.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id8">[1]</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PreprocesssedTask.solver">(biosimulators_tellurium.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id3">[1]</a>
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</li>
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</ul></li>
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</ul></td>
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</tr></table>
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<h2 id="T">T</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.SedmlInterpreter.tellurium">tellurium (biosimulators_tellurium.data_model.SedmlInterpreter attribute)</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.SedmlInterpreter.tellurium">(biosimulators_tellurium.SedmlInterpreter attribute)</a>
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</li>
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</ul></li>
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</ul></td>
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</tr></table>
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<h2 id="V">V</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.data_model.PreprocesssedTask.variable_target_tellurium_observable_map">variable_target_tellurium_observable_map (biosimulators_tellurium.data_model.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id9">[1]</a>
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<ul>
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<li><a href="source/biosimulators_tellurium.html#biosimulators_tellurium.PreprocesssedTask.variable_target_tellurium_observable_map">(biosimulators_tellurium.PreprocesssedTask attribute)</a>, <a href="source/biosimulators_tellurium.html#id4">[1]</a>
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</li>
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</ul></li>
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</tr></table>
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docs/index.html

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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>BioSimulators-tellurium documentation &#8212; BioSimulators-tellurium 0.1.17 documentation</title>
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<title>BioSimulators-tellurium documentation &#8212; BioSimulators-tellurium 0.1.18 documentation</title>
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<link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
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<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>

docs/installation.html

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<title>Installation instructions &#8212; BioSimulators-tellurium 0.1.17 documentation</title>
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<title>Installation instructions &#8212; BioSimulators-tellurium 0.1.18 documentation</title>
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docs/py-modindex.html

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<title>Python Module Index &#8212; BioSimulators-tellurium 0.1.17 documentation</title>
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<title>Python Module Index &#8212; BioSimulators-tellurium 0.1.18 documentation</title>
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docs/search.html

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<title>Search &#8212; BioSimulators-tellurium 0.1.17 documentation</title>
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<title>Search &#8212; BioSimulators-tellurium 0.1.18 documentation</title>
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<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
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<link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
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