v2.4.0

Author: PollyTikhonova

.gitignore

@@ -1,5 +1,9 @@
 # Created by .ignore support plugin (hsz.mobi)
 ### Python template
+# Custom
+proc/*
+.DS_Store
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]

README.md

@@ -1,7 +1,6 @@
-# Phigaro v2.3.0
+# Phigaro v2.4.0
 [![PyPI version](https://badge.fury.io/py/phigaro.svg)](https://badge.fury.io/py/phigaro)
-![Conda installation](https://anaconda.org/bioconda/phigaro/badges/installer/conda.svg)
-![Actions Status](https://github.com/bobeobibo/phigaro/workflows/Phigaro%20Tests/badge.svg)
+![Conda installation](https://anaconda.org/bioconda/phigaro/badges/version.svg)
 ![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
 

deployment.sh

@@ -0,0 +1,28 @@
+#!/bin/bash
+conda activate main
+pip install --upgrade twine
+echo "Did you change git action and updated the package?"
+read
+git status
+read
+git pull
+read
+rm dist/*
+python setup_version.py
+python setup.py sdist bdist_wheel
+read
+git add --all
+git status
+read
+read -p commit_name="Please, make up the commit name:"
+tag=`cat tag_name`
+git commit -m $commit_name
+read
+git tag $tag
+read
+git push
+read
+git push --tags
+read
+twine upload --repository phigaro dist/*
+read

dist/phigaro-2.3.0-py2.py3-none-any.whl

@@ -1,6 +1,6 @@
 name: phigaro_env
 dependencies:
-  - python=3.7
+  - python<=3.12.1
   - pip
   - bioconda::prodigal
   - bioconda::hmmer

dist/phigaro-2.3.0.tar.gz

@@ -1,4 +1,4 @@
 """Version information."""
 
 # The following line *must* be the last in the module, exactly as formatted:
-__version__ ="2.3.0"
+__version__ ="2.4.0"

dist/phigaro-2.4.0-py2.py3-none-any.whl

@@ -14,9 +14,7 @@ class AbstractTask(object):
 
     def __init__(self):
         if self.task_name is None:
-            raise Exception(
-                "{}.task_name must by set".format(self.__class__.__name__)
-            )
+            raise Exception("{}.task_name must by set".format(self.__class__.__name__))
 
         self.directory()
         self.context = Context.instance()