fix(deps): update all non-major dependencies

Author: renovate[bot]

.github/workflows/deploy_docs.yaml

@@ -15,7 +15,7 @@ jobs:
       - name: Install python 3.11
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.13"
 
       - name: Install dependencies
         run: |

.github/workflows/release_pypi.yaml

@@ -20,7 +20,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.13"
 
       - name: Install dependencies
         run: |

.github/workflows/test.yaml

@@ -95,7 +95,7 @@ jobs:
       - name: Install python 3.11
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.13"
 
       - name: Install dependencies
         run: |

pyproject.toml

@@ -18,7 +18,7 @@ dependencies = [
   "pandas>=2.2.3,<3",
   "plotly-geo>=1.0.0,<2",
   "plotly>=6.0.1,<7",
-  "pygef>=0.11.0,<0.12",
+  "pygef>=0.12.1,<0.13",
   "scipy>=1.15.2,<2",
   "shapely>=2.1.0,<3",
   "tqdm[notebook]>=4.67.1,<5",
@@ -35,24 +35,24 @@ test = ["coveralls", "pytest", "openapi-core"]
 docs = [
   "Sphinx==8.2.3",
   "asteroid-sphinx-theme==0.0.3",
-  "ipython==9.1.0",
-  "sphinx-autodoc-typehints==3.1.0",
+  "ipython==9.4.0",
+  "sphinx-autodoc-typehints==3.2.0",
   "sphinx_rtd_theme==3.0.2",
 ]
 # lint dependencies from github super-linter
 # See https://github.com/super-linter/super-linter/tree/main/dependencies/python
 # Get a file with the latest requirements by running bash: `./get-super-linter-requirements.sh`
 # ignoring because redundant: snakemake, snakefmt, pylint
 lint = [
-  "ansible-lint==25.1.3",
+  "ansible-lint==25.8.1",
   "black==25.1.0",
-  "cfn-lint==1.33.2",
-  "cpplint==2.0.0",
-  "flake8==7.1.2",
-  "isort==6.0.0",
-  "mypy==1.15.0",
-  "sqlfluff==3.3.1",
-  "yamllint==1.35.1",
+  "cfn-lint==1.38.3",
+  "cpplint==2.0.2",
+  "flake8==7.3.0",
+  "isort==6.0.1",
+  "mypy==1.17.1",
+  "sqlfluff==3.4.2",
+  "yamllint==1.37.1",
   "yq==3.4.3",
 ]