Handle multiple files analyses in IFCshiny

[gitdemont]

IFCshiny (v <= 0.1.3) can be used to treat one file at a time.

The idea is to allow user to perform thier analyses on multiple files.
Tasks to accomplish are:

• read multiple files
• apply gating strategy on multiple files
• navigate between files
• compare populations between files (graphs, ML, stats)
• export treated files
• export results (graphs, stats)

Others ?
In dev branch for this can be installed by:
-installing new dependencies (in addition to the one in IFCshiny readme:

install.packages(c("decido", "heatmaply"))

-installing IFCshiny with multiple files capability:

remotes::install_github(repo = "gitdemont/IFCshiny", ref = "batch", dependencies = FALSE)

[HXB2AG]

Apology for the late test, but not functional for me:

• with install IFCshiny ref ="batch" -> version (0.1.2.100) (and IFC 0.1.2.101)

  Avis dans if (.libPaths() %in% dirname(dirname(dirname(.rundir)))) .passphrase = "" :
  la condition a une longueur > 1 et seul le premier élément est utilisé
  Erreur dans get(x, envir = ns, inherits = FALSE) :
  objet 'convert_to_baseplot' introuvable

et IFCshiny 0.1.3

With the install of IFCshiny with the ref ="master" -> version 0.1.3 ((and IFC 0.1.2.101)

IFCshiny::runIFCshinyApp()
Avis dans if (.libPaths() %in% dirname(dirname(dirname(.rundir)))) .passphrase = "" :
la condition a une longueur > 1 et seul le premier élément est utilisé
Erreur dans get(x, envir = ns, inherits = FALSE) :
objet 'parseFCSname' introuvable

Thanks

[gitdemont]

Hi @HXB2AG,

Sorry for that.
It happens because I did modifications in both IFC and IFCshiny dev versions.
Making the batch branch of IFCshiny temporarily unavailable.
I did plan to push things before but I was a little bit distracted by work engaged on plot rasterization to be able to handle millions of points in plot module of the app that I wanted to incorporate.
But since IFCshiny is highly dependent on IFC, those kind of improvements require in-depth modifications of IFC internals in addition to IFCshiny itself.

Could you please try with the recent updates:

# remove former versions
try(remove.packages("IFC"))
try(remove.packages("IFCip"))
try(remove.packages("IFCshiny"))

# then in a fresh session
remotes::install_github(repo = "gitdemont/IFC", ref = "master", dependencies = FALSE, force = TRUE)
remotes::install_github(repo = "gitdemont/IFCip", ref = "master", dependencies = FALSE, force = TRUE)
remotes::install_github(repo = "gitdemont/IFCshiny", ref = "batch", dependencies = FALSE, force = TRUE)

# then once packages installed
IFCshiny::runIFCshinyApp()

[HXB2AG]

I have now a new problem, precisely with plot_rasterization ? :
`IFCshiny::runIFCshinyApp()

Avis dans if (.libPaths() %in% dirname(dirname(dirname(.rundir)))) .passphrase = "" :
la condition a une longueur > 1 et seul le premier élément est utilisé
Erreur dans get(x, envir = ns, inherits = FALSE) :
objet 'plot_raster' introuvable`

With
IFC 0.1.2.102
IFCdata 0.0.1
IFCip 0.0.1
IFCshiny 0.1.2.102

[gitdemont]

This is quite weird.
Just in case I bumped version of IFC@master to v0.1.2.103 and IFCshiny@batch to v0.1.2.103
So can you try

try(remove.packages("IFC"))
try(remove.packages("IFCshiny"))

# then in a fresh session
remotes::install_github(repo = "gitdemont/IFC", ref = "master", dependencies = FALSE, force = TRUE)
remotes::install_github(repo = "gitdemont/IFCshiny", ref = "batch", dependencies = FALSE, force = TRUE)

This should allow you to run

IFCshiny::runIFCshinyApp()

If it is not working could you tell me what are the results of

utils::packageVersion("IFC")
# expected: ‘0.1.2.103’
utils::packageVersion("IFCshiny")
# expected: ‘0.1.2.103’
try(invisible(getFromNamespace("plot_raster", "IFC")))
# expected: no error should be thrown

[gitdemont]

Batch branch has now been merged with master