Merge pull request #2094 from glotzerlab/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

Author: joaander

.pre-commit-config.yaml

@@ -68,14 +68,14 @@ repos:
   hooks:
     - id: nbstripout
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: 'v0.11.4'
+  rev: 'v0.12.2'
   hooks:
   - id: ruff-format
     types_or: [python]
   - id: ruff
     types_or: [python]
 - repo: https://github.com/pre-commit/mirrors-clang-format
-  rev: v20.1.0
+  rev: v20.1.7
   hooks:
   - id: clang-format
     types_or: [c, c++, cuda, inc]

hoomd/logging.py

@@ -265,10 +265,10 @@ def yield_names(self, user_name=None):
         if user_name is None:
             namespace = self.namespace
         else:
-            namespace = self.namespace[:-1] + (user_name,)
+            namespace = (*self.namespace[:-1], user_name)
         yield (*namespace, self.name)
         for i in count(start=1, step=1):
-            yield namespace[:-1] + (namespace[-1] + "_" + str(i), self.name)
+            yield (*namespace[:-1], namespace[-1] + "_" + str(i), self.name)
 
     def update_cls(self, cls):
         """Allow updating the class/namespace of the object.

hoomd/md/pytest/test_burst_writer.py

@@ -183,8 +183,9 @@ def test_burst_dump(sim, tmp_path, start, end):
         if end == -1:
             end = len(dumped_frames)
         with gsd.hoomd.open(name=filename, mode="r") as traj:
-            assert [frame.configuration.step for frame in traj] == [0] + dumped_frames[
-                start:end
+            assert [frame.configuration.step for frame in traj] == [
+                0,
+                *dumped_frames[start:end],
             ]
 
 

hoomd/pytest/test_local_snapshot.py

@@ -381,9 +381,9 @@ def check_shape(data, prop_dict, tags):
         if len(tags) == 0:
             assert data.shape == (0,)
         else:
-            assert data.shape == (len(tags),) + prop_dict["shape"][1:]
+            assert data.shape == (len(tags), *prop_dict["shape"][1:])
     else:
-        assert data.shape == (len(tags),) + prop_dict["shape"][1:]
+        assert data.shape == (len(tags), *prop_dict["shape"][1:])
 
 
 def check_getting(data, prop_dict, tags):

hoomd/pytest/test_logging.py

@@ -48,7 +48,7 @@ def test_yield_names(self, dummy_namespace):
             else:
                 break
         user_defined_namespace = next(quantity.yield_names("USER"))
-        assert user_defined_namespace == dummy_namespace[:-1] + ("USER", name)
+        assert user_defined_namespace == (*dummy_namespace[:-1], "USER", name)
 
     def test_generate_namespace(self):
         assert _LoggerQuantity._generate_namespace(TestLoggerQuantity) == (
@@ -324,7 +324,8 @@ def test_add_single_quantity(self, blank_logger, log_quantity):
         assert log_value.attr == log_quantity.name
         assert log_value.category == log_quantity.category
         blank_logger._add_single_quantity([], log_quantity, None)
-        namespace = log_quantity.namespace[:-1] + (
+        namespace = (
+            *log_quantity.namespace[:-1],
             log_quantity.namespace[-1] + "_1",
             log_quantity.name,
         )
@@ -403,8 +404,8 @@ def test_add_with_user_names(self, logged_obj, base_namespace):
         # Test adding a user specified identifier into the namespace
         user_name = "UserName"
         logger.add(logged_obj, user_name=user_name)
-        assert base_namespace[:-1] + (user_name, "prop") in logger
-        assert base_namespace[:-1] + (user_name, "proplist") in logger
+        assert (*base_namespace[:-1], user_name, "prop") in logger
+        assert (*base_namespace[:-1], user_name, "proplist") in logger
 
     def test_remove(self, logged_obj, base_namespace):
         # Test removing all properties
@@ -451,17 +452,18 @@ def test_remove(self, logged_obj, base_namespace):
         assert prop_namespace in log
         assert list_namespace in log
         assert (
-            prop_namespace[:-2] + (prop_namespace[-2] + "_1", prop_namespace[-1])
-            not in log
-        )
+            *prop_namespace[:-2],
+            prop_namespace[-2] + "_1",
+            prop_namespace[-1],
+        ) not in log
 
     def test_remove_with_user_name(self, logged_obj, base_namespace):
         # Test remove using a user specified namespace identifier
         logger = Logger()
         user_name = "UserName"
         logger.add(logged_obj, user_name=user_name)
-        assert base_namespace[:-1] + (user_name, "prop") in logger
-        assert base_namespace[:-1] + (user_name, "proplist") in logger
+        assert (*base_namespace[:-1], user_name, "prop") in logger
+        assert (*base_namespace[:-1], user_name, "proplist") in logger
 
     def test_iadd(self, blank_logger, logged_obj):
         blank_logger.add(logged_obj)

hoomd/write/hdf5.py

@@ -185,7 +185,7 @@ def _create_dataset(self, key: str, shape, dtype, chunk_size):
             shape,
             dtype=dtype,
             chunks=chunk_size,
-            maxshape=(None,) + shape[1:],
+            maxshape=(None, *shape[1:]),
         )
 
     @_skip_fh
@@ -218,7 +218,8 @@ def _initialize_datasets(self, log_dict):
                 dtype = value.dtype
                 chunk_size = (
                     max(self._MULTIFRAME_ARRAY_CHUNK_MAXIMUM // value.nbytes, 1),
-                ) + data_shape[1:]
+                    *data_shape[1:],
+                )
             self._create_dataset(
                 "/".join(("hoomd-data", *key)), data_shape, dtype, chunk_size
             )