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Update indexing subcommand help text and parameters Build and Test #84: Commit 8aa7cb7 pushed by EricR86
May 16, 2025 15:38 1m 11s master
master
May 16, 2025 15:38 1m 11s
Initial rework of subcommands and help text Build and Test #83: Commit 4d1c173 pushed by EricR86
May 15, 2025 19:39 1m 7s master
master
May 15, 2025 19:39 1m 7s
Initial rework of subcommands and help text Build and Test #82: Commit e15d083 pushed by EricR86
May 15, 2025 17:04 1m 11s master
master
May 15, 2025 17:04 1m 11s
Initial rework of subcommands and help text Build and Test #81: Commit e27ceb3 pushed by EricR86
May 15, 2025 16:57 1m 27s master
master
May 15, 2025 16:57 1m 27s
Fix docs and help text Build and Test #80: Commit c52c21d pushed by EricR86
May 9, 2025 14:58 1m 9s master
master
May 9, 2025 14:58 1m 9s
Change multiread mappability output to use a direct write Build and Test #79: Commit c42d2da pushed by EricR86
February 25, 2025 15:42 1m 38s master
master
February 25, 2025 15:42 1m 38s
Calculate the number of decimal places to output to wig file format Build and Test #78: Commit d38dfd7 pushed by EricR86
February 24, 2025 20:42 1m 22s master
master
February 24, 2025 20:42 1m 22s
Improve multiread mappability calculation for speed and memory usage Build and Test #77: Commit dfcf85a pushed by EricR86
February 24, 2025 18:34 1m 6s master
master
February 24, 2025 18:34 1m 6s
Replace manual array mappability buffer with numpy oriented buffering Build and Test #76: Commit 4d3c044 pushed by EricR86
February 20, 2025 19:32 1m 12s master
master
February 20, 2025 19:32 1m 12s
Buffer writing out mulitread mappability files Build and Test #75: Commit a552447 pushed by EricR86
February 19, 2025 17:40 1m 7s master
master
February 19, 2025 17:40 1m 7s
Update documentation with new mappability positional argument Build and Test #74: Commit a437048 pushed by EricR86
February 10, 2025 17:29 1m 17s master
master
February 10, 2025 17:29 1m 17s
Put kmer length as a positional argument in mappability output. Build and Test #73: Commit c7416d0 pushed by EricR86
February 10, 2025 17:07 1m 33s master
master
February 10, 2025 17:07 1m 33s
Fix out-of-bound indexing for multiread mappability calculation Build and Test #72: Commit b803bcb pushed by EricR86
February 10, 2025 15:19 1m 22s master
master
February 10, 2025 15:19 1m 22s
Significantly improve speed of multiread mappability calculation Build and Test #71: Commit 7cc3cf3 pushed by EricR86
February 7, 2025 16:38 1m 32s master
master
February 7, 2025 16:38 1m 32s
Options and defaults clean up for mappability output Build and Test #70: Commit 8741c04 pushed by EricR86
January 29, 2025 15:59 1m 33s master
master
January 29, 2025 15:59 1m 33s
Options and defaults clean up for mappability output Build and Test #69: Commit b465f40 pushed by EricR86
January 29, 2025 15:35 1m 23s master
master
January 29, 2025 15:35 1m 23s
Update single read mappability to use buffered writing Build and Test #68: Commit 16c609f pushed by EricR86
January 28, 2025 19:50 1m 11s master
master
January 28, 2025 19:50 1m 11s
Write out multi-read mappability wig files using buffered IO and bytes Build and Test #67: Commit 61eea6a pushed by EricR86
January 28, 2025 19:26 1m 8s master
master
January 28, 2025 19:26 1m 8s
Remove misleading comment Build and Test #66: Commit d82c055 pushed by EricR86
December 16, 2024 15:17 1m 16s master
master
December 16, 2024 15:17 1m 16s
Refactor upper search bound calculation Build and Test #65: Commit 66eb20c pushed by EricR86
December 13, 2024 21:20 1m 9s master
master
December 13, 2024 21:20 1m 9s
Rename get_ambiguous_positions to get_ambiguous_sequence_mask Build and Test #64: Commit ffb38a1 pushed by EricR86
December 10, 2024 16:37 1m 9s master
master
December 10, 2024 16:37 1m 9s
Added error messaging when no sequence gets processed Build and Test #63: Commit 4186005 pushed by EricR86
December 5, 2024 14:37 1m 10s master
master
December 5, 2024 14:37 1m 10s
Add option to convert many unique files to a single mappability output Build and Test #62: Commit 4a2505a pushed by EricR86
December 3, 2024 17:12 1m 11s master
master
December 3, 2024 17:12 1m 11s
Add option to convert many unique files to a single mappability output Build and Test #61: Commit 4164ec2 pushed by EricR86
December 3, 2024 17:07 1m 13s master
master
December 3, 2024 17:07 1m 13s
Fix linear search regression on invalid query k-mer lengths Build and Test #60: Commit e92bb99 pushed by EricR86
December 2, 2024 21:28 1m 11s master
master
December 2, 2024 21:28 1m 11s