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Skip tests that rely on an existing index
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tests/test_count_kmers.py

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@@ -10,17 +10,20 @@ def setUp(self):
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self.genome_index_filename = str(TEST_DATA_PATH / 'genome.awfmi')
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self.num_threads = 1
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@unittest.skip("Test relies on large data file not in respository")
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def test_count_kmers(self):
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counts = count_kmers(self.genome_index_filename,
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[b'AAAA', b'AT', b'TAT', b'CCC', b'NNN', b'TCGT'],
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self.num_threads)
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self.assertEqual(counts, [9, 3, 1, 8, 0, 0])
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@unittest.skip("Test relies on large data file not in respository")
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def test_count_wrong_type(self):
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with self.assertRaises(TypeError):
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count_kmers(self.genome_index_filename, ["AAAA"],
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self.num_threads)
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@unittest.skip("Test relies on large data file not in respository")
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def test_empty_byte_string(self):
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with self.assertRaises(ValueError):
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count_kmers(self.genome_index_filename, [b'AAAA', b'', b'TAT'],

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