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Update run_medaka.sh
Removed: # Set the memory allocation for samtools sort (e.g., 4G per thread) export SAMTOOLS_SORT_MEMORY=4G Signed-off-by: Ian M. B. <99409346+iPsychonaut@users.noreply.github.com>
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run_medaka.sh

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@@ -6,9 +6,6 @@ source ~/mambaforge/etc/profile.d/conda.sh
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# Activate the medaka conda environment
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conda activate medaka
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# Set the memory allocation for samtools sort (e.g., 4G per thread)
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export SAMTOOLS_SORT_MEMORY=4G
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# Define your variables
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reads_to_consensus_fastq="$1"
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consensus_ref_fasta="$2"

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