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Merge pull request #417 from vladistan/fix-monarch-schemaview-notebook
Fixup Monarch Schemaview notebook
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notebooks/SchemaView_Monarch.ipynb

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@@ -18,9 +18,10 @@
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"metadata": {},
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"outputs": [],
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"source": [
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"from linkml_runtime.utils.schemaview import SchemaView\n",
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"import requests\n",
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"\n",
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"from linkml_runtime.utils.schemaview import SchemaView\n",
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"\n",
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"# note you can also use a path on a local filesystem\n",
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"view = SchemaView(\"https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml\")"
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]
@@ -91,7 +92,7 @@
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"# object = 'phenotypic feature'\n",
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"object = \"sequence variant\"\n",
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"\n",
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"query_prefix = f\"https://www.ebi.ac.uk/ols/api/ontologies/_ontology/terms/\"\n",
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"query_prefix = \"https://www.ebi.ac.uk/ols/api/ontologies/_ontology/terms/\"\n",
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"mappings = view.get_mappings(object)\n",
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"if len(mappings) == 0:\n",
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" print(\"no exact mappings found for: \" + object)\n",
@@ -197,8 +198,8 @@
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"source": [
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"# find predicates for those associations\n",
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"# at this point, navigating the online doc might be easiest if you just want answers.\n",
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"# programatically, we can get the predicates that have equivalent domain and range constraints to find which\n",
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"# coudl be used for associations above.\n"
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"# programmatically, we can get the predicates that have equivalent domain and range constraints to find which\n",
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"# could be used for associations above.\n"
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]
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},
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{

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