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README.md

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v2.0.0 [<img src="https://www.ymcachicago.org/page/-/kroehler/blog/icon-new-9.jpg" alt="new" width="30"></img>](./inst/update_notes/functionality_update.md)
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[![Build Status](https://travis-ci.com/linquynus/TFregulomeR-dev.svg?branch=master)](https://travis-ci.com/linquynus/TFregulomeR-dev)
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New features:
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1. Link to data compendium hosted in Singapore and Canada;
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2. Link to TF motifs and DNA methylation in human and mouse;
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3. Perform TF interactome analysis coupled with DNA methylation and other chromatin signals such as chromatin accessibility.
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# Introduction
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*TFregulomeR* comprises of a comprehensive compendium of transcription factor binding sites (TFBSs) derived from the MethMotif and GTRD, as well as the ready-to-use functionality in R language facilitating data access, integration and analysis. The binding motifs predicted in-silico from MethMotif and GTRD describe cell specific transcription factor (TF) binding propensities, while the DNA methylation profiles from MethMotif portray a second epigenetic dimension in TF binding events. The whole toolbox allows a better understanding of the TF binding propensities in a cell-specific manner.
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inst/update_notes/compendium_update.md

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## Current TFBSs in TFregulomeR compendium v2.0.0
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What's new in the version v2.0.0 - 5 March 2019:
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1) 865 PWMs in mouse were added (For Canada server; for Singpaore server coming soon).
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1) 865 PWMs in mouse were added (For Canada server; for Singapore server coming soon).
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## Previous TFregulomeR data compendium

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