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DESCRIPTION

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Package: TFregulomeR
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Type: Package
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Title: Characterisation of transcription factor context-specific features and functions
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Title: TFregulomeR reveals transcription factors’ context-specific features and functions
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Version: 1.1.0
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Description: An R-package linked to a large timely-updated compendium of cistrome and methylome datasets, implemented with functionalities that facilitate the manipulation and analysis of TFBS and methylome meta-data. In particular, TFregulomeR permits the characterisation of TF binding partners and cell-specific TFBSs, along with the study of TF’s functions in the context of different partners’ combinations and DNA methylation levels.
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Authors@R: c(person("Quy Xiao Xuan", "Lin", email = "linquyzju@gmail.com", role = c("aut", "cre")),

README.md

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A manuscript describing *TFregulomeR* has been submitted for peer review. If you currently use *TFregulomeR*, please cite us as follows:
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Quy Xiao Xuan Lin, Denis Thieffry, Sudhakar Jha, Touati Benoukraf. _TFregulomeR: Flexible characterisation of transcription factor binding partners using cell-specific cistrome and methylome meta-data._ 2019. https://github.com/benoukraflab/TFregulomeR
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Quy Xiao Xuan Lin, Denis Thieffry, Sudhakar Jha, Touati Benoukraf. _TFregulomeR reveals transcription factors’ context-specific features and functions_ 2019. https://github.com/benoukraflab/TFregulomeR
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vignettes/TFregulomeR.Rmd

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---
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title: "TFregulomeR: Characterisation of transcription factor context-specific features and functions"
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title: "TFregulomeR reveals transcription factors’ context-specific features and functions"
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author:
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- name: Quy Xiao Xuan Lin
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affiliation: National University of Singapore
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toc: true
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fig_caption: yes
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vignette: >
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%\VignetteIndexEntry{TFregulomeR: Characterisation of transcription factor context-specific features and functions}
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%\VignetteIndexEntry{TFregulomeR reveals transcription factors’ context-specific features and functions}
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%\VignetteEngine{knitr::rmarkdown}
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%\VignetteEncoding{UTF-8}
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---

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