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1 parent 63d58d0 commit 01b5779Copy full SHA for 01b5779
src/main/kotlin/biokotlin/util/MergeGVCFUtils.kt
@@ -17,6 +17,12 @@ import java.io.File
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private val myLogger = LogManager.getLogger("biokotlin.util.MergeGVCFUtils")
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+/**
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+ * Merges GVCF files into a single VCF file.
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+ * The GVCF files should have only one sample each.
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+ * If a bedfile is provided, then the output VCF file is split into multiple files
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+ * based on the ranges in the bedfile.
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+ */
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object MergeGVCFUtils {
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fun mergeGVCFs(inputDir: String, outputFile: String, bedfile: String? = null) {
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