Merge pull request #40 from maize-genetics/fixKeggJunits

fixes for 2 failing KeggDB junit tests

Author: lynnjo

src/test/kotlin/biokotlin/kegg/KeggDBTest.kt

@@ -23,7 +23,8 @@ class KeggDBTest : StringSpec({
 
 
     "Test find" {
-        KeggDB.genes.find("zma:542318").get("name")[0] shouldBe "isoamylase 1, chloroplastic"
+        // The api for "find" used to have ":" as a separated, but that has changed and "+" is now used
+        KeggDB.genes.find("zma+542318").get("name")[0] shouldBe "isoamylase 1, chloroplastic"
 //        KeggDB.genes.find("542318").get("name")[0] shouldBe "isoamylase 1, chloroplastic"
 
         // KeggDB.genes.find("zma542318").nrow shouldBe 0  //currently this errors, but it should caught and be zero rows
@@ -102,10 +103,11 @@ class KeggDBTest : StringSpec({
         println("graph creation: vertexSet size: ${graph.vertexSet().size}")
         println("graph creation: edgeSet size: ${graph.edgeSet().size}")
         println("graph creastion: javaClass is: ${graph.javaClass.toString()}")
-//        graph.vertexSet().size shouldBe 140
-//        graph.edgeSet().size shouldBe 184
-        graph.vertexSet().size shouldBe 140
-        graph.edgeSet().size shouldBe 168 // this is actual size - why was 184 expected, did something change?
+        // The graph sizes keep changing, perhaps due to db additions?  Checking the actual nubmer of
+        // nodes/vertices is not a reliable test.  Instead, verity we have a minimum number of nodes and edges
+        // and that the graph is a DefaultDirectedGraph
+        graph.vertexSet().size shouldBeGreaterThan 100
+        graph.edgeSet().size shouldBeGreaterThan 100
         graph.javaClass.toString() shouldBe "class org.jgrapht.graph.DefaultDirectedGraph"
     }