Bump phonopy from 2.24.3 to 2.25.0 (#906)

Bumps [phonopy](https://phonopy.github.io/phonopy/) from 2.24.3 to 2.25.0.

---
updated-dependencies:
- dependency-name: phonopy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Author: dependabot[bot]

pyproject.toml

@@ -95,7 +95,7 @@ strict = [
     "monty==2024.5.24",
     "mp-api==0.41.2",
     "numpy",
-    "phonopy==2.24.3",
+    "phonopy==2.25.0",
     "pydantic-settings==2.3.3",
     "pydantic==2.7.4",
     "pymatgen-analysis-defects==2024.5.11",