You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm using:
nequip 0.6.0 develop version
allegro 0.3.0 develop version
I'm struggling with keymapping my extxyz datasets, where I have tried the following for my config file:
dataset: ase # type of data set, can be npz or asedataset_file_name: ./data/ase_vcrti_neb_all_ind_samp_25per_train.extxyzase_args:
format: extxyzdataset_key_mapping:
REF_energy: total_energyREF_force: forcesREF_stress: stressvalidation_dataset: asevalidation_dataset_file_name: ./data/ase_vcrti_neb_all_ind_samp_25per_val.extxyzvalidation_ase_args:
format: extxyzvalidation_dataset_key_mapping:
REF_energy: total_energyREF_force: forcesREF_stress: stress
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
Uh oh!
There was an error while loading. Please reload this page.
-
Hi,
I'm using:
nequip 0.6.0 develop version
allegro 0.3.0 develop version
I'm struggling with keymapping my extxyz datasets, where I have tried the following for my config file:
I see the following in the logs:
For training:
Loaded data: Batch(atomic_numbers=[1397907, 1], batch=[1397907], cell=[22189, 3, 3], edge_cell_shift=[83772862, 3], edge_index=[2, 83772862], forces=[1397907, 3], free_energy=[22189], pbc=[22189, 3], pos=[1397907, 3], ptr=[22190], total_energy=[22189, 1]) processed data size: ~3283.10 MB
Training optional args:
For validation:
Loaded data: Batch(atomic_numbers=[174699, 1], batch=[174699], cell=[2773, 3, 3], edge_cell_shift=[10463362, 3], edge_index=[2, 10463362], forces=[174699, 3], free_energy=[2773], pbc=[2773, 3], pos=[174699, 3], ptr=[2774], total_energy=[2773, 1]) processed data size: ~410.07 MB
Validation optional args:
I get the following error:
It seems like my key_mapping for stress is not working? Has anyone had this happen to them?
Thanks,
Myles
Beta Was this translation helpful? Give feedback.
All reactions