Merge pull request #265 from mlr-org/keep_model

Support hyperparameter 'model' in surv.rpart

Author: RaphaelS1

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: mlr3proba
 Title: Probabilistic Supervised Learning for 'mlr3'
-Version: 0.4.6
+Version: 0.4.7
 Authors@R:
     c(person(given = "Raphael",
              family = "Sonabend",

NEWS.md

@@ -1,3 +1,7 @@
+# mlr3proba 0.4.7
+
+* Fix bug in {rpart} where model was being discarded when set to be kept. Parameter `model` now called `keep_model`.
+
 # mlr3proba 0.4.6
 
 * Patch for upstream breakages

R/LearnerSurvRpart.R

@@ -6,6 +6,7 @@
 #'
 #' @description
 #' Parameter `xval` is set to 0 in order to save some computation time.
+#' Parameter `model` has been renamed to `keep_model`.
 #'
 #' @references
 #' `r format_bib("breiman_1984")`
@@ -28,7 +29,8 @@ LearnerSurvRpart = R6Class("LearnerSurvRpart",
         usesurrogate   = p_int(default = 2L, lower = 0L, upper = 2L, tags = "train"),
         surrogatestyle = p_int(default = 0L, lower = 0L, upper = 1L, tags = "train"),
         xval           = p_int(default = 10L, lower = 0L, tags = "train"),
-        cost           = p_uty(tags = "train")
+        cost           = p_uty(tags = "train"),
+        keep_model     = p_lgl(default = FALSE, tags = "train")
       )
       ps$values = list(xval = 0L)
 
@@ -69,6 +71,7 @@ LearnerSurvRpart = R6Class("LearnerSurvRpart",
   private = list(
     .train = function(task) {
       pv = self$param_set$get_values(tags = "train")
+      names(pv) = replace(names(pv), names(pv) == "keep_model", "model")
       if ("weights" %in% task$properties) {
         pv = insert_named(pv, list(weights = task$weights$weight))
       }

man/mlr_learners_surv.coxph.Rd

@@ -16,3 +16,9 @@ test_that("importance/selected", {
   expect_silent(learner$selected_features())
   expect_silent(learner$importance())
 })
+
+test_that("keep_model", {
+  learner = lrn("surv.rpart", keep_model = TRUE)
+  learner$train(tsk("rats"))
+  expect_false(is.null(learner$model$model))
+})