update deepvariant

Author: maxulysse

tests/variant_calling_deepvariant.nf.test.snap

@@ -10,7 +10,7 @@
                     "gawk": "5.1.0"
                 },
                 "DEEPVARIANT_RUNDEEPVARIANT": {
-                    "deepvariant": "1.8.0"
+                    "deepvariant": "1.9.0"
                 },
                 "GATK4_INTERVALLISTTOBED": {
                     "gatk4": "4.6.1.0"
@@ -159,7 +159,7 @@
                 "multiqc_citations.txt:md5,d40980f61eb64026d58102841b7f3860",
                 "samtools-stats-dp.txt:md5,06abce459a3e3192252b6196ae3b189e",
                 "samtools_alignment_plot.txt:md5,3622ecb71829cc1c581157e403048fd1",
-                "test.deepvariant.bcftools_stats.txt:md5,942c7931ed08d691a32859dff091c22f",
+                "test.deepvariant.bcftools_stats.txt:md5,a19ff85c0bc9796ace876f3a9c34c6ce",
                 "test.recal.mosdepth.global.dist.txt:md5,bdb8f185c35dd1eec7ce2f69bce57972",
                 "test.recal.mosdepth.region.dist.txt:md5,f1f1ad86fc280bced1888a5d7d25a3f2",
                 "test.recal.mosdepth.summary.txt:md5,32ea70ef1b99def3dc900b4afd513a40",
@@ -171,15 +171,15 @@
             "No BAM files",
             "No CRAM files",
             [
-                "test.deepvariant.g.vcf.gz:md5,a51327a75372557eece796de33dc3318",
-                "test.deepvariant.vcf.gz:md5,e4a7b726e2f3db8ac15d08dd7e564519"
+                "test.deepvariant.g.vcf.gz:md5,706cb23dc04a7e1055f3e5739666615",
+                "test.deepvariant.vcf.gz:md5,dc50f0a5b27f3ade02c745e69e69ad29"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-07-11T14:21:37.715139375"
+        "timestamp": "2025-08-15T13:33:55.373929003"
     },
     "-profile test --tools deepvariant --input tests/csv/3.0/mapped_single_cram.csv -stub": {
         "content": [
@@ -483,7 +483,7 @@
                     "bcftools": 1.21
                 },
                 "DEEPVARIANT_RUNDEEPVARIANT": {
-                    "deepvariant": "1.8.0"
+                    "deepvariant": "1.9.0"
                 },
                 "MOSDEPTH": {
                     "mosdepth": "0.3.10"
@@ -629,7 +629,7 @@
                 "multiqc_citations.txt:md5,d40980f61eb64026d58102841b7f3860",
                 "samtools-stats-dp.txt:md5,06abce459a3e3192252b6196ae3b189e",
                 "samtools_alignment_plot.txt:md5,3622ecb71829cc1c581157e403048fd1",
-                "test.deepvariant.bcftools_stats.txt:md5,942c7931ed08d691a32859dff091c22f",
+                "test.deepvariant.bcftools_stats.txt:md5,a19ff85c0bc9796ace876f3a9c34c6ce",
                 "test.recal.mosdepth.global.dist.txt:md5,bdb8f185c35dd1eec7ce2f69bce57972",
                 "test.recal.mosdepth.region.dist.txt:md5,f1f1ad86fc280bced1888a5d7d25a3f2",
                 "test.recal.mosdepth.summary.txt:md5,32ea70ef1b99def3dc900b4afd513a40",
@@ -641,14 +641,14 @@
             "No BAM files",
             "No CRAM files",
             [
-                "test.deepvariant.g.vcf.gz:md5,a51327a75372557eece796de33dc3318",
-                "test.deepvariant.vcf.gz:md5,e4a7b726e2f3db8ac15d08dd7e564519"
+                "test.deepvariant.g.vcf.gz:md5,706cb23dc04a7e1055f3e5739666615",
+                "test.deepvariant.vcf.gz:md5,dc50f0a5b27f3ade02c745e69e69ad29"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-07-11T14:23:00.812174813"
+        "timestamp": "2025-08-15T13:35:04.879965529"
     }
 }