Add R smooth package from CRAN

Author: emiliom

r/Dockerfile

@@ -75,7 +75,9 @@ RUN --mount=type=cache,id=ohw_r,target=/opt/conda/pkgs,uid=${NB_UID},gid=${NB_UI
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 
-# Install BigelowLab dev R libs
+# Install R libs from CRAN and GitHub
+# 2024-10-10: Have there been improvements in install_cran and install_github such that 
+# dependencies, upgrade_dependencies, upgrade could now be set to TRUE or the default?
 # RUN installGithub.R BigelowLab/rasf BigelowLab/ohwobpg  # not working on GH but works locally :-/
 RUN Rscript -e "remotes::install_cran('assertthat', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
     Rscript -e "remotes::install_cran('forecast', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
@@ -87,6 +89,7 @@ RUN Rscript -e "remotes::install_cran('assertthat', dependencies=FALSE, upgrade_
     Rscript -e "remotes::install_cran('rnoaa', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
     Rscript -e "remotes::install_cran('satin', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
     Rscript -e "remotes::install_cran('sfnetworks', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
+    Rscript -e "remotes::install_cran('smooth', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
     Rscript -e "remotes::install_github('BigelowLab/ohwobpg', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
     Rscript -e "remotes::install_github('BigelowLab/rasf', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \
     Rscript -e "remotes::install_github('BigelowLab/xyzt', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \

r/conda-linux-64.lock

@@ -28,6 +28,7 @@ https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.43-h4bf
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 https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.28-hb9d3cd8_0.conda#1b53af320b24547ce0fb8196d2604542
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.1-heb4867d_0.conda#db792eada25e970c46642f624b029fd7
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@@ -47,7 +48,6 @@ https://conda.anaconda.org/conda-forge/linux-64/aws-c-compression-0.2.19-h756ea9
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 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.33.1-heb4867d_0.conda#0d3c60291342c0c025db231353376dfb
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@@ -73,13 +73,13 @@ https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.17.0-h8a09558_0.conda#9
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-https://conda.anaconda.org/conda-forge/linux-64/s2n-1.5.4-h1380c3d_0.conda#4e63e4713ffc9cddc3d5d435b5853b93
+https://conda.anaconda.org/conda-forge/linux-64/s2n-1.5.5-h3931f03_0.conda#334dba9982ab9f5d62033c61698a8683
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-https://conda.anaconda.org/conda-forge/linux-64/aws-c-io-0.14.18-h4e6ae90_11.conda#21fd3e17dab1b20a0acdbc8b406ee7af
+https://conda.anaconda.org/conda-forge/linux-64/aws-c-io-0.14.18-h2af50b2_12.conda#700f1883f5a0a28c30fd98c43d4d946f
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@@ -148,7 +148,7 @@ https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.1.0-py39hf88036b
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-https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.2-pyhd8ed1ab_0.conda#7f4a9e3fcff3f6356ae99244a014da6a
+https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.0-pyhd8ed1ab_0.conda#a374efa97290b8799046df7c5ca17164
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@@ -175,7 +175,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.10.1-hbbe4b11_0.conda#
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-https://conda.anaconda.org/conda-forge/linux-64/markupsafe-2.1.5-py39h8cd3c5a_1.conda#4e045330e331d55a42ab44618315808e
+https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.1-py39h9399b63_1.conda#0782842622e8dc374909a8c39bafe9f3
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@@ -189,6 +189,7 @@ https://conda.anaconda.org/conda-forge/linux-64/pickleshare-0.7.5-py39hde42818_1
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 https://conda.anaconda.org/conda-forge/noarch/prometheus_client-0.21.0-pyhd8ed1ab_0.conda#07e9550ddff45150bfc7da146268e165
+https://conda.anaconda.org/conda-forge/linux-64/propcache-0.2.0-py39h8cd3c5a_2.conda#2fd375656ffb2f1bbb44d0eb9f723239
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@@ -227,7 +228,7 @@ https://conda.anaconda.org/conda-forge/noarch/webencodings-0.5.1-pyhd8ed1ab_2.co
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-https://conda.anaconda.org/conda-forge/linux-64/zeromq-4.3.5-ha4adb4c_5.conda#e8372041ebb377237db9d0d24c7b5962
+https://conda.anaconda.org/conda-forge/linux-64/zeromq-4.3.5-h3b0a872_6.conda#113506c8d2d558e733f5c38f6bf08c50
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@@ -286,7 +287,7 @@ https://conda.anaconda.org/conda-forge/noarch/fqdn-1.5.1-pyhd8ed1ab_0.tar.bz2#64
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-https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2023.12.1-pyhd8ed1ab_0.conda#a0e4efb5f35786a05af4809a2fb1f855
+https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2024.10.1-pyhd8ed1ab_0.conda#720745920222587ef942acfbc578b584
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@@ -315,7 +316,7 @@ https://conda.anaconda.org/conda-forge/noarch/oauthlib-3.2.2-pyhd8ed1ab_0.tar.bz
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-https://conda.anaconda.org/conda-forge/linux-64/yarl-1.13.1-py39h8cd3c5a_0.conda#223d87719750dbb388cbc18d964ecf14
+https://conda.anaconda.org/conda-forge/linux-64/yarl-1.14.0-py39h8cd3c5a_0.conda#aefe5e8b6c61810bf76c972544eb61f0
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+https://conda.anaconda.org/conda-forge/linux-64/r-leafpop-0.1.0-r43h93ab643_3.conda#27a4dfc7819b5705bf17391dab48f942
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