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    258 repositories

    • links

      Public
      Url shortener for Sydney Informatics Hub links
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Aug 21, 2025Aug 21, 2025

    • scrna-analysis

      Public
      A set of notebooks and scripts for analysing single cell RNA sequencing data.
      R
      •0•0•29•1•Updated Aug 21, 2025Aug 21, 2025

    • rocrate-tabular

      Public
      Python library for converting an RO-Crate to tabular representations
      HTML
      •3•2•31•0•Updated Aug 21, 2025Aug 21, 2025

    • ONT-bacpac-nf

      Public
      Bacterial profiling workflow for ONT data, written in Nextflow.
      Nextflow
      •
      GNU General Public License v3.0
      •0•2•23•1•Updated Aug 14, 2025Aug 14, 2025

    • hansard-rights-data-vis

      Public
      Data visualisation of UK Hansard data using Observable Framework
      JavaScript
      •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

    • stats-resources

      Public
      SIH Statistics resources
      HTML
      •
      Other
      •4•7•0•0•Updated Aug 11, 2025Aug 11, 2025

    • hello-nextflow-2025

      Public
      Introduction to Nextflow training material 2025
      Shell
      •2•1•1•0•Updated Aug 11, 2025Aug 11, 2025

    • usyd-gadi-onboarding-guide

      Public
      User guide for onboarding USyd users to NCI Gadi
      CSS
      •
      MIT License
      •0•3•3•0•Updated Aug 8, 2025Aug 8, 2025

    • nci-su-calculator

      Public
      HTML
      •0•0•1•0•Updated Aug 5, 2025Aug 5, 2025

    • proteinfold

      Public
      Protein 3D structure prediction pipeline
      Nextflow
      •
      MIT License
      •58•0•0•0•Updated Aug 3, 2025Aug 3, 2025

    • research-computing-tools

      Public
      0•0•0•0•Updated Aug 2, 2025Aug 2, 2025

    • Fastq-to-VCF

      Public
      High throughput illumina mammalian whole genome sequence analysis and joint genotyping
      Shell
      •0•0•2•0•Updated Jul 31, 2025Jul 31, 2025

    • tinycrate

      Public
      A tiny RO-Crate library in Python
      Python
      •1•1•9•1•Updated Jul 18, 2025Jul 18, 2025

    • RefCheckAI

      Public
      AI Reference Checker: Automated citation validation for AI-generated and academic content.
      0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • tidbits

      Public
      SIH's "tech tidbits" blog for sharing useful tools and tips
      HTML
      •1•1•1•0•Updated Jun 30, 2025Jun 30, 2025

    • .github

      Public
      0•0•0•1•Updated Jun 26, 2025Jun 26, 2025

    • Bioinformatics

      Public
      A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
      bioinformaticssnpsgenomicsnextflowcancersomatic-variantsngsmetagenomicsbioinformatics-pipelinernaseq
      1•17•2•0•Updated Jun 26, 2025Jun 26, 2025

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •320•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • PIPE-4779-Intracardiac-Electrograms

      Public
      Machine Learning for identifying ventricular scar.
      HTML
      •0•0•5•0•Updated Jun 14, 2025Jun 14, 2025

    • ables

      Public
      Australian BioCommons Leadership Share (ABLeS) documentation
      SCSS
      •11•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • ResearchPulseAI

      Public
      AI-driven Research Impact Assessment Tool and Case Study Generator for NSW Health
      0•0•0•0•Updated May 29, 2025May 29, 2025

    • knowledgebase

      Public
      Content for linking to USYD knowledgebase
      0•0•0•0•Updated May 26, 2025May 26, 2025

    • aigis

      Public
      Tools for aerial and satellite imagery acquisition, processing, annotation, and analysis using artificial intelligence
      pythoncomputer-visiongeospatialgistransformerspytorchaerial-imagerysegmentation
      Python
      •
      MIT License
      •1•9•4•1•Updated May 23, 2025May 23, 2025

    • nextflow-hpc-workshop

      Public
      Shell
      •8•0•9•1•Updated Mar 28, 2025Mar 28, 2025

    • rstan-contained

      Public
      A container to run RStan on a Centos 6.10 host.
      Dockerfile
      •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • usydColours

      Public
      University of Sydney colour palettes for ggplot2
      R
      •2•12•1•0•Updated Mar 11, 2025Mar 11, 2025

    • EDAinR

      Public
      0•0•11•0•Updated Feb 26, 2025Feb 26, 2025

    • PIPE-5742-Dairy-MSAccess

      Public
      Shell script for converting old *.mdb files
      Shell
      •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • mermaid-crate

      Public
      Convert a Mermaid-js diagram into an RO-Crate workflow
      JavaScript
      •0•0•1•0•Updated Feb 19, 2025Feb 19, 2025

    • LLM-LCT-sequencing

      Public
      AI Semantic Insights: LLM Toolkit for Analysing Educational Practices and Knowledge Building.
      classificationknowledge-representationllm
      Python
      •
      MIT License
      •0•1•2•0•Updated Feb 18, 2025Feb 18, 2025