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    22 repositories

    • CellViT-Inference

      Public
      Python
      •
      Other
      •1•9•1•0•Updated Aug 13, 2025Aug 13, 2025

    • medical_image_deidentification

      Public
      De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy
      Python
      •
      Other
      •2•15•0•0•Updated Aug 6, 2025Aug 6, 2025

    • CellViT-plus-plus

      Public
      Python
      •
      Other
      •29•139•16•1•Updated Jul 23, 2025Jul 23, 2025

    • CellViT

      Public
      CellViT: Vision Transformers for Precise Cell Segmentation and Classification
      pythonaimlpytorchcellmicroscopydigitalpathology
      Python
      •
      Other
      •55•314•19•0•Updated Jul 23, 2025Jul 23, 2025

    • AMD_SemSeg

      Public
      Other
      •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • Spacewalker

      Public
      Traversing Representation Spaces for Fast Interactive Exploration and Annotation of Unstructured Data
      pythonaiannotationvisualisationdimensionality-reductionvizualization
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated May 30, 2025May 30, 2025

    • controlled-clinical-generation

      Public
      This repository accompanies the paper Towards Conditioning Clinical Text Generation for User Control, which explores methods for enhancing controllability in clinical text generation through dataset augmentation and structured generation workflows.
      0•0•0•0•Updated May 28, 2025May 28, 2025

    • PathoPatcher

      Public
      PathoPatcher is a Python project designed for accelerating Whole Slide Image Preprocessing, employing AI-based preprocessing techniques with features like annotation handling, color normalization, and configurable parameters
      preprocessingdigital-pathologypathologywsicpathwsi-images
      Python
      •
      Other
      •6•8•2•0•Updated May 8, 2025May 8, 2025

    • PhaseGen

      Public
      PhaseGen - Generate MRI raw data based on magnitudinal data
      mridiffusion-models
      Python
      •
      Other
      •0•6•0•0•Updated Apr 22, 2025Apr 22, 2025

    • AR_HINTS

      Public
      The repository accompanying the HINTS paper in Frontiers in Neurology. An OST-HMD (HL2) was used to perform head-eye tracking measurements during the application. The application guided subjects through the HINTS exam using voice commands after eye calibration. The results were post-processed and visualised in Python.
      ShaderLab
      •
      Other
      •0•1•0•0•Updated Mar 21, 2025Mar 21, 2025

    • PUMA

      Public
      Python
      •0•1•1•0•Updated Mar 18, 2025Mar 18, 2025

    • Transfer-learning-across-domain-boundaries

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Feb 4, 2025Feb 4, 2025

    • CLUE

      Public
      CLUE: A Clinical Language Understanding Evaluation for LLMs
      Python
      •
      MIT License
      •4•19•0•0•Updated Jan 22, 2025Jan 22, 2025

    • TwixMRIAnonymizer

      Public
      Lightweight anonymization tool for Siemens twix MRI dataformat (.dat)
      mrisiemensraw-dataanonymizationtwix
      Python
      •
      MIT License
      •0•4•0•0•Updated Jan 21, 2025Jan 21, 2025

    • k-Strip

      Public
      k-strip: A novel segmentation algorithm in k-space for the application of skull stripping
      pythonaimlmrik-spaceskull-strippingcvnn
      Python
      •
      Other
      •1•6•0•0•Updated Nov 11, 2024Nov 11, 2024

    • ML_in_Medicine_Interactive_Seminar

      Public
      Course materials of WS 2022/2023 Uni-DuE Seminar "ML in Medicine - Theory & Practice"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • Tumor-likelihood-estimation-on-MRI-prostate-data-by-utilizing-k-Space-information

      Public
      Preprocessing and prediction pipeline for the classification of magnetic resonance imaging (MRI) that takes advantage of the information rich complex valued k-Space.
      machine-learningmrik-space
      Python
      •0•5•0•0•Updated Jul 17, 2024Jul 17, 2024

    • MLiM22-website

      Public
      TeX
      •0•0•1•0•Updated May 23, 2024May 23, 2024

    • MOMO_Submission_Code

      Public
      Submission Code for "Deep Learning-driven classification of external DICOM studies for PACS archivation"
      Jupyter Notebook
      •
      MIT License
      •2•2•1•0•Updated Feb 7, 2024Feb 7, 2024

    • LeanStudyHost

      Public
      LeanStudyHost: A minimalist software solution to manage medical image based studies
      JavaScript
      •0•2•0•0•Updated Jan 24, 2024Jan 24, 2024

    • valuing-vicinity

      Public
      Valuing Vicinity: Memory attention framework for context-based semantic segmentation in histopathology
      Python
      •0•9•1•0•Updated Jun 12, 2023Jun 12, 2023

    • coder-aws

      Public
      A teaching platform based on Coder, hosted on AWS
      Shell
      •
      MIT License
      •0•0•0•0•Updated Mar 29, 2023Mar 29, 2023