sysbiolux

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40 repositories

rFASTCORMICS
Public
paper metabolic-networks
MATLAB
•
GNU Lesser General Public License v3.0
•0•5•1•0•Updated Aug 20, 2025Aug 20, 2025
PD-rSNP_SCARB2
Public
Shell
•0•1•0•0•Updated Jul 14, 2025Jul 14, 2025
cancer_epigenetics_FUSO
Public
Shell
•0•0•0•0•Updated Jul 11, 2025Jul 11, 2025
Multi-tissue-model
Public
paper metabolic-networks
GNU General Public License v3.0
•1•1•0•0•Updated Jul 3, 2025Jul 3, 2025
RasCilium
Public
MATLAB
•0•0•0•0•Updated Jun 2, 2025Jun 2, 2025
scFASTCORMICS
Public
paper metabolic-networks
MATLAB
•1•0•1•0•Updated Apr 16, 2025Apr 16, 2025
ISB705MetabolicNetworkModeling
Public
teaching metabolic-networks
HTML
•1•1•0•0•Updated Mar 29, 2025Mar 29, 2025
pypglm_main
Public
Temporary repo for Master thesis evaluation
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Jan 13, 2025Jan 13, 2025
FALCON
Public
FALCON: A Toolbox for the Fast Contextualization of Logical Networks
paper signaling-networks
MATLAB
•
GNU General Public License v3.0
•5•5•0•0•Updated Jan 10, 2025Jan 10, 2025
GliomaGEM
Public
Glioma metabolic modelling for repurposing of single and combination drugs
paper metabolic-networks
R
•0•0•0•0•Updated Nov 30, 2024Nov 30, 2024
MidbrainOrganoid_Miro1_scMetabMod
Public
Multi-cell population modelling predicts metabolic activity of midbrain organoids
metabolic-networks
MATLAB
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 27, 2024Nov 27, 2024
Helgueta_et_al_2023
Public
Companion repo for the article by Sergio Helgueta et al.
paper
GNU General Public License v3.0
•0•1•0•0•Updated Nov 5, 2024Nov 5, 2024
DeepOncoAI
Public
ML cancer drug sensitivity
machine-learning
Python
•1•3•0•0•Updated Nov 4, 2024Nov 4, 2024
Clinical_Biomarker_Detection
Public
DRIVEN-DTU WP13: Biomarker Detection In Clinical Cohort Data Using Machine Learning
machine-learning paper
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Oct 18, 2024Oct 18, 2024
IHEC_metabolism
Public
0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
cobratoolbox_rFASTCORMICS
Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MATLAB
•
Other
•331•0•0•0•Updated Jun 29, 2024Jun 29, 2024
AKR1A1-Deficiency
Public
metabolic-networks
MATLAB
•0•0•0•0•Updated Apr 30, 2024Apr 30, 2024
MedicagoScripts
Public
MATLAB
•1•1•0•0•Updated Apr 2, 2024Apr 2, 2024
IDARE
Public
IDARE - Multiomics Visualisation in Cytoscape
paper cytoscape metabolic-networks
Java
•
GNU Lesser General Public License v3.0
•1•2•0•2•Updated Dec 5, 2023Dec 5, 2023
cobratoolboxrFASTCORMICS
Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MATLAB
•
Other
•331•0•0•0•Updated Nov 30, 2023Nov 30, 2023
NutriHuMiX
Public
paper metabolic-networks
0•0•0•0•Updated Nov 7, 2023Nov 7, 2023
MelanomaPaper
Public
Consensus models of Bintener et al. 2023
paper metabolic-networks
0•0•0•0•Updated Jul 21, 2023Jul 21, 2023
cobratoolbox
Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MATLAB
•
Other
•331•0•0•0•Updated Jul 7, 2023Jul 7, 2023
GomezRamos_et_al_2023
Public
paper
Python
•0•0•0•0•Updated Nov 2, 2022Nov 2, 2022
IDARE-QuickStart
Public
metabolic-networks
0•1•0•0•Updated Jun 27, 2022Jun 27, 2022
GBM_survival
Public
Python
•0•0•0•0•Updated Jun 10, 2022Jun 10, 2022
Biomass_formulation
Public
paper metabolic-networks
MATLAB
•3•1•0•0•Updated Feb 21, 2022Feb 21, 2022
Herbal_drug_prediction
Public
A workflow for ranking herbal drugs using metabolic modeling and flux variability anaylsis.
paper metabolic-networks
R
•
MIT License
•1•1•0•0•Updated Feb 21, 2022Feb 21, 2022
DCcov
Public
Drug repositioning of single and drug combinations using Flux Balance Analysis.
paper metabolic-networks
Jupyter Notebook
•4•5•0•0•Updated Nov 25, 2021Nov 25, 2021
algorecell
Public
AlgoReCell project
MATLAB
•0•1•0•0•Updated Oct 15, 2021Oct 15, 2021