Skip to content

Commit 8ed214a

Browse files
chore(deps): update dependency black to v24 [security]
1 parent 8726429 commit 8ed214a

File tree

2 files changed

+30
-96
lines changed

2 files changed

+30
-96
lines changed

poetry.lock

Lines changed: 27 additions & 79 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

pyproject.toml

Lines changed: 3 additions & 17 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[tool.poetry]
22
name = "pyrovelocity"
3-
version = "0.4.0"
3+
version = "0.3.0"
44
packages = [{ include = "pyrovelocity", from = "src" }]
55
description = "A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabilistic modeling with pyro."
66
authors = ["pyrovelocity team"]
@@ -45,7 +45,6 @@ click = ">=8.1.7"
4545
colorlog = ">=6.7.0"
4646
daft = ">=0.1.2"
4747
diffrax = ">=0.5.0"
48-
dill = ">=0.3.8"
4948
diskcache = ">=5.6.1"
5049
duckdb = ">=1.0.0"
5150
einops = ">=0.7.0"
@@ -61,7 +60,6 @@ fsspec = ">=2024.3.0"
6160
greenlet = ">=3.0.3"
6261
httpx = ">=0.27.0"
6362
h5py = ">=3.9.0"
64-
# hdf5plugin = ">=4.4.0"
6563
ibis-framework = { extras = ["duckdb"], version = ">=9.2.0" }
6664
jax = ">=0.4.23"
6765
jaxlib = ">=0.4.23"
@@ -79,7 +77,6 @@ matplotlib = ">=3.9.1"
7977
mlflow = ">=2.13.0"
8078
numpyro = ">=0.15.0"
8179
pandas = ">=2.0.0"
82-
pillow = ">=10.1.0"
8380
plumbum = ">=1.8.2"
8481
polars = ">=0.20.17"
8582
pyarrow = ">=14.0.2"
@@ -139,7 +136,6 @@ google-api-python-client = { version = ">=2.79.0", optional = true }
139136
hydra-core = { version = ">=1.3.2", optional = true }
140137
hydra-zen = { version = ">=0.12.1", optional = true }
141138
hypothesis = { version = ">=6.71.0", optional = true }
142-
ipdb = { version = ">=0.13.13", optional = true }
143139
ipython = { version = ">=8.11.0", optional = true }
144140
ipywidgets = { version = ">=8.0.0", optional = true }
145141
# isort = { version = ">=5.10.1", optional = true }
@@ -168,7 +164,6 @@ pytest = { version = ">=6.2.5", optional = true }
168164
pytest-asyncio = { version = ">=0.21.1", optional = true }
169165
pytest-cov = { version = ">=4.0.0", optional = true }
170166
pytest-mock = { version = ">=3.10.0", optional = true }
171-
pytest-xdist = { version = ">=3.1.0", optional = true }
172167
python-dotenv = { version = ">=1.0.0", optional = true }
173168
# pyupgrade = { version = ">=2.29.1", optional = true }
174169
# pyvis = { version = ">=0.3.2", optional = true }
@@ -223,15 +218,13 @@ optional = true
223218
[tool.poetry.group.test.dependencies]
224219
coverage = { version = ">=6.2", extras = ["toml"] }
225220
hypothesis = ">=6.72.1"
226-
ipdb = ">=0.13.13"
227221
ipython = ">=8.11.0"
228222
# poethepoet = ">=0.19.0"
229223
pygments = ">=2.15.0"
230224
pytest = ">=7.3.1"
231225
pytest-asyncio = ">=0.21.1"
232226
pytest-cov = ">=4.0.0"
233227
pytest-mock = ">=3.10.0"
234-
pytest-xdist = ">=3.1.0"
235228
requests-mock = ">=1.11.0"
236229
xdoctest = ">=1.1.1"
237230

@@ -308,7 +301,6 @@ test = [
308301
"pytest-asyncio",
309302
"pytest-cov",
310303
"pytest-mock",
311-
"pytest-xdist",
312304
"requests-mock",
313305
"xdoctest",
314306
]
@@ -431,13 +423,8 @@ log_level = "INFO"
431423
# We exclude markers associated with slow tests by default
432424
# but run them in CI with the make target `test-cov-xml`
433425
# which overrides this behavior.
434-
# Add these options to enable the ipdb debugger:
435-
# --pdb
436-
# --pdbcls=IPython.terminal.debugger:Pdb
437-
# Run tests in parallel with pytest-xdist:
438-
# -n auto
439426
addopts = """
440-
-m "not slow and not pyensembl and not network"
427+
-m "not slow and not pyensembl"
441428
-rA
442429
--xdoctest
443430
--disable-warnings
@@ -451,7 +438,6 @@ markers = [
451438
"pyensembl: Tests that require pyensembl to run.",
452439
"slow: Tests that are slow and should be run separately.",
453440
"integration: Tests that use many library components.",
454-
"network: Tests that use network resources.",
455441
]
456442

457443
[tool.coverage.paths]
@@ -624,5 +610,5 @@ exclude = [
624610
]
625611

626612
[build-system]
627-
requires = ["poetry-core>=1.6.0,<2"]
613+
requires = ["poetry-core>=1.6.0"]
628614
build-backend = "poetry.core.masonry.api"

0 commit comments

Comments
 (0)