Resolving "non-zero exit status" #248
Description
I am trying to install the "spocc" package to conduct some GIS-based analysis using species occurrence data. I have tried to follow the installation guides provided online, but continue to fail to install the package.
Whenever I try to install the package, a number of the dependencies, including "rvertnet", "rbison" and "rgbif" are flagged as having a "non-zero exit status".... Having spoken to other R-users, they too appear to have the same issues.
Could you please recommend a workaround for this issue?
Thank you.
remotes::install_github('ropensci/spocc') # alternative pathway # Can't get to install, try to install independent packages, then reload
Downloading GitHub repo ropensci/spocc@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?
1: All
2: CRAN packages only
3: None
4: wellknown (0.6.0 -> 0.7.4) [CRAN]
Enter one or more numbers, or an empty line to skip updates:
Installing 3 packages: rvertnet, rbison, rgbif
Installing packages into ‘C:/Users/User/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependency ‘wellknown’
There are binary versions available but the source versions are later:
binary source needs_compilation
wellknown 0.6.0 0.7.4 TRUE
rvertnet 0.8.0 0.8.2 FALSE
rbison 0.8.0 1.0.0 FALSE
rgbif 2.2.0 3.6.0 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/wellknown_0.6.0.zip'
Content type 'application/zip' length 582990 bytes (569 KB)
downloaded 569 KB
package ‘wellknown’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\User\AppData\Local\Temp\RtmpAvT46Q\downloaded_packages
installing the source packages ‘rvertnet’, ‘rbison’, ‘rgbif’
trying URL 'https://cran.rstudio.com/src/contrib/rvertnet_0.8.2.tar.gz'
Content type 'application/x-gzip' length 768107 bytes (750 KB)
downloaded 750 KB
trying URL 'https://cran.rstudio.com/src/contrib/rbison_1.0.0.tar.gz'
Content type 'application/x-gzip' length 1726473 bytes (1.6 MB)
downloaded 1.6 MB
trying URL 'https://cran.rstudio.com/src/contrib/rgbif_3.6.0.tar.gz'
Content type 'application/x-gzip' length 3612058 bytes (3.4 MB)
downloaded 3.4 MB
- installing source package 'rvertnet' ...
** package 'rvertnet' successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rvertnet'
finding HTML links ... done
bigsearch html
dump-defunct html
rvertnet-defunct html
rvertnet-package html
searchbyterm html
spatialsearch html
traitsearch html
vert_id html
vertavailablemaps-defunct html
vertlocations-defunct html
vertmap html
vertoccurrence-defunct html
vertoccurrencecount-defunct html
vertproviders-defunct html
vertsearch html
vertsummary html
verttaxa-defunct html
*** copying figures
** building package indices
** testing if installed package can be loaded
*** arch - i386
Error: package or namespace load failed for 'rvertnet' in library.dynam(lib, package, package.lib):
DLL 'maps' not found: maybe not installed for this architecture?
Error: loading failed
Execution halted
*** arch - x64
ERROR: loading failed for 'i386' - removing 'C:/Users/User/Documents/R/win-library/3.5/rvertnet'
In R CMD INSTALL - installing source package 'rbison' ...
** package 'rbison' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rbison'
finding HTML links ... done
all_states html
bison html
bison_datause html
bison_providers html
bison_solr html
bison_stats html
bison_tax html
bisonmap html
fips html
is.bison html
is.bison_solr html
rbison-package html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
Error: package or namespace load failed for 'rbison' in library.dynam(lib, package, package.lib):
DLL 'maps' not found: maybe not installed for this architecture?
Error: loading failed
Execution halted
*** arch - x64
ERROR: loading failed for 'i386' - removing 'C:/Users/User/Documents/R/win-library/3.5/rbison'
In R CMD INSTALL - installing source package 'rgbif' ...
** package 'rgbif' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace 'wellknown' 0.6.0 is being loaded, but >= 0.7.2 is required
ERROR: lazy loading failed for package 'rgbif' - removing 'C:/Users/User/Documents/R/win-library/3.5/rgbif'
In R CMD INSTALL
The downloaded source packages are in
‘C:\Users\User\AppData\Local\Temp\RtmpAvT46Q\downloaded_packages’
√ checking for file 'C:\Users\User\AppData\Local\Temp\RtmpAvT46Q\remotesf84332b17b3\ropensci-spocc-ae4f55f/DESCRIPTION'
- preparing 'spocc': (515ms)
√ checking DESCRIPTION meta-information ... - checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
Removed empty directory 'spocc/inst'
Removed empty directory 'spocc/vignettes' - building 'spocc_1.2.0.91.tar.gz'
Installing package into ‘C:/Users/User/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
ERROR: dependencies 'rgbif', 'rbison', 'rvertnet' are not available for package 'spocc'
- removing 'C:/Users/User/Documents/R/win-library/3.5/spocc'
In R CMD INSTALL
Warning messages:
1: In i.p(...) :
installation of package ‘rvertnet’ had non-zero exit status
2: In i.p(...) : installation of package ‘rbison’ had non-zero exit status
3: In i.p(...) : installation of package ‘rgbif’ had non-zero exit status
4: In i.p(...) :
installation of package ‘C:/Users/User/AppData/Local/Temp/RtmpAvT46Q/filef8450765237/spocc_1.2.0.91.tar.gz’ had non-zero exit status