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Support windows in stats API that do not span whole genome #2782

@jeromekelleher

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@jeromekelleher

Currently the stats API requires that we cover the entire genome with windows, which is restrictive. In particular, it prevents us from parallelising along the genome in a simple way.

The main roadblock for this is the low-level implementation of the stats, which use incremental algorithms that don't support starting and stopping easily.

This would be an excellent application for the approach discussed in #2778

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    enhancementNew feature or requestfutureIssues that are closed as they are not planned in the medium-term, but which are still desirable.statistics

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