@@ -79,7 +79,7 @@ they can be created by [evolutionary simulation](https://tskit.dev/software/#sim
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or by [ inferring genealogies from empirical DNA data] ( https://tskit.dev/software/#infer ) .
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:::{margin} Key point
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- Tree sequences are used to encode and analyse large genetic datasets
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+ Tree sequences are used to encode and analyse large genetic datasets.
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:::
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Tree sequences provide an efficient way of storing
@@ -226,7 +226,7 @@ branches of the trees, and the positions of the twelve variable sites associated
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mutations are shown along the X axis.
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:::{margin} Key point
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- Mutation on trees are the source of genetic variation
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+ Mutation on trees are the source of genetic variation.
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:::
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The trees inform us that, for example, the final mutation (at position 987) is inherited
@@ -266,7 +266,7 @@ ts.draw_svg(
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```
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:::{margin} Key point
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- Tree sequences are efficient because they don't store each tree separately
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+ Tree sequences are efficient because they don't store each tree separately.
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:::
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A branch can be shared by many adjacent trees, but is stored as a single edge in the tree
@@ -314,9 +314,9 @@ plt.show()
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::::{margin}
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:::{note}
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- The genetic genealogy is sometimes referred to as an ancestral recombination graph,
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- or ARG, and one way to think of tskit tree sequence is as a way
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- to store various different sorts of ARGs (see the {ref}` ARG tutorial<sec_args> ` )
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+ The genetic genealogy is sometimes referred to as an ancestral recombination graph (ARG) ,
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+ and one way to think of tskit tree sequence is as a way
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+ to store various different sorts of ARGs (see the {ref}` ARG tutorial<sec_args> ` ).
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:::
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::::
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@@ -428,7 +428,7 @@ multiple correlated trees along a genome.
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``` {margin} Key point
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Most genetic calculations involve iterating over trees, which is highly efficient in
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- {program}`tskit`
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+ {program}`tskit`.
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```
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For example, statistical measures of genetic variation can be thought of as a calculation
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