migrations to extend dendrorelated data storage in accordance with TriDaS

Author: MartinHinz

app/models/dendro.rb

@@ -2,27 +2,44 @@
 #
 # Table name: dendros
 #
-#  id           :bigint           not null, primary key
-#  description  :text
-#  end_year     :integer
-#  is_anchored  :boolean          default(FALSE)
-#  measurements :jsonb            not null
-#  name         :string           not null
-#  offset       :integer
-#  series_code  :string           not null
-#  start_year   :integer
-#  created_at   :datetime         not null
-#  updated_at   :datetime         not null
-#  sample_id    :bigint           not null
+#  id                 :bigint           not null, primary key
+#  death_year         :integer
+#  description        :text
+#  end_year           :integer
+#  first_year         :integer
+#  is_anchored        :boolean          default(FALSE)
+#  last_year          :integer
+#  measurements       :jsonb            not null
+#  name               :string           not null
+#  object_description :text
+#  object_dimensions  :jsonb
+#  object_title       :string
+#  object_type        :string
+#  offset             :integer
+#  parameters         :jsonb
+#  pith_year          :integer
+#  project_end_date   :datetime
+#  project_objective  :text
+#  project_start_date :datetime
+#  project_title      :string
+#  series_code        :string           not null
+#  start_year         :integer
+#  wood_completeness  :jsonb
+#  created_at         :datetime         not null
+#  updated_at         :datetime         not null
+#  chronology_id      :bigint
+#  sample_id          :bigint           not null
 #
 # Indexes
 #
-#  index_dendros_on_measurements  (measurements) USING gin
-#  index_dendros_on_sample_id     (sample_id)
-#  index_dendros_on_series_code   (series_code) UNIQUE
+#  index_dendros_on_chronology_id  (chronology_id)
+#  index_dendros_on_measurements   (measurements) USING gin
+#  index_dendros_on_sample_id      (sample_id)
+#  index_dendros_on_series_code    (series_code) UNIQUE
 #
 # Foreign Keys
 #
+#  fk_rails_...  (chronology_id => chronologies.id)
 #  fk_rails_...  (sample_id => samples.id)
 #
 class Dendro < ApplicationRecord

db/migrate/20241216082910_create_chronologies.rb

@@ -0,0 +1,13 @@
+class CreateChronologies < ActiveRecord::Migration[7.0]
+  def change
+    create_table :chronologies do |t|
+      t.string :name
+      t.string :type
+      t.string :method
+      t.string :standardizing_method
+      t.string :certainty
+      t.jsonb :parameters, default: {}
+      t.timestamps
+    end
+  end
+end

db/migrate/20241216082922_update_dendros_for_chronologies_and_metadata.rb

@@ -0,0 +1,30 @@
+class UpdateDendrosForChronologiesAndMetadata < ActiveRecord::Migration[7.0]
+  def change
+    change_table :dendros do |t|
+      # Project-level metadata
+      t.string :project_title
+      t.text :project_objective
+      t.datetime :project_start_date
+      t.datetime :project_end_date
+
+      # Object-level metadata
+      t.string :object_title
+      t.string :object_type
+      t.text :object_description
+      t.jsonb :object_dimensions, default: {}
+
+      # Dendrochronological interpretation
+      t.integer :pith_year
+      t.integer :death_year
+      t.integer :first_year
+      t.integer :last_year
+      t.jsonb :wood_completeness, default: {}
+
+      # Chronology foreign key
+      t.bigint :chronology_id, index: true
+      t.jsonb :parameters, default: {}
+    end
+
+    add_foreign_key :dendros, :chronologies
+  end
+end

db/schema.rb

@@ -10,7 +10,7 @@
 #
 # It's strongly recommended that you check this file into your version control system.
 
-ActiveRecord::Schema[7.0].define(version: 2024_12_15_123653) do
+ActiveRecord::Schema[7.0].define(version: 2024_12_16_082922) do
   # These are extensions that must be enabled in order to support this database
   enable_extension "pg_trgm"
   enable_extension "plpgsql"
@@ -101,6 +101,17 @@
     t.index ["type", "c14_age", "c14_error", "c14_curve"], name: "index_cals_on_type_and_c14_age_and_c14_error_and_c14_curve", unique: true
   end
 
+  create_table "chronologies", force: :cascade do |t|
+    t.string "name"
+    t.string "type"
+    t.string "method"
+    t.string "standardizing_method"
+    t.string "certainty"
+    t.jsonb "parameters", default: {}
+    t.datetime "created_at", null: false
+    t.datetime "updated_at", null: false
+  end
+
   create_table "citations", force: :cascade do |t|
     t.bigint "reference_id"
     t.string "citing_type"
@@ -132,6 +143,22 @@
     t.jsonb "measurements", default: [], null: false
     t.datetime "created_at", null: false
     t.datetime "updated_at", null: false
+    t.string "project_title"
+    t.text "project_objective"
+    t.datetime "project_start_date"
+    t.datetime "project_end_date"
+    t.string "object_title"
+    t.string "object_type"
+    t.text "object_description"
+    t.jsonb "object_dimensions", default: {}
+    t.integer "pith_year"
+    t.integer "death_year"
+    t.integer "first_year"
+    t.integer "last_year"
+    t.jsonb "wood_completeness", default: {}
+    t.bigint "chronology_id"
+    t.jsonb "parameters", default: {}
+    t.index ["chronology_id"], name: "index_dendros_on_chronology_id"
     t.index ["measurements"], name: "index_dendros_on_measurements", using: :gin
     t.index ["sample_id"], name: "index_dendros_on_sample_id"
     t.index ["series_code"], name: "index_dendros_on_series_code", unique: true
@@ -383,6 +410,7 @@
 
   add_foreign_key "active_storage_attachments", "active_storage_blobs", column: "blob_id"
   add_foreign_key "active_storage_variant_records", "active_storage_blobs", column: "blob_id"
+  add_foreign_key "dendros", "chronologies"
   add_foreign_key "dendros", "samples"
   add_foreign_key "import_tables", "users"
   add_foreign_key "oauth_access_grants", "oauth_applications", column: "application_id"

spec/factories/dendros.rb

@@ -2,27 +2,44 @@
 #
 # Table name: dendros
 #
-#  id           :bigint           not null, primary key
-#  description  :text
-#  end_year     :integer
-#  is_anchored  :boolean          default(FALSE)
-#  measurements :jsonb            not null
-#  name         :string           not null
-#  offset       :integer
-#  series_code  :string           not null
-#  start_year   :integer
-#  created_at   :datetime         not null
-#  updated_at   :datetime         not null
-#  sample_id    :bigint           not null
+#  id                 :bigint           not null, primary key
+#  death_year         :integer
+#  description        :text
+#  end_year           :integer
+#  first_year         :integer
+#  is_anchored        :boolean          default(FALSE)
+#  last_year          :integer
+#  measurements       :jsonb            not null
+#  name               :string           not null
+#  object_description :text
+#  object_dimensions  :jsonb
+#  object_title       :string
+#  object_type        :string
+#  offset             :integer
+#  parameters         :jsonb
+#  pith_year          :integer
+#  project_end_date   :datetime
+#  project_objective  :text
+#  project_start_date :datetime
+#  project_title      :string
+#  series_code        :string           not null
+#  start_year         :integer
+#  wood_completeness  :jsonb
+#  created_at         :datetime         not null
+#  updated_at         :datetime         not null
+#  chronology_id      :bigint
+#  sample_id          :bigint           not null
 #
 # Indexes
 #
-#  index_dendros_on_measurements  (measurements) USING gin
-#  index_dendros_on_sample_id     (sample_id)
-#  index_dendros_on_series_code   (series_code) UNIQUE
+#  index_dendros_on_chronology_id  (chronology_id)
+#  index_dendros_on_measurements   (measurements) USING gin
+#  index_dendros_on_sample_id      (sample_id)
+#  index_dendros_on_series_code    (series_code) UNIQUE
 #
 # Foreign Keys
 #
+#  fk_rails_...  (chronology_id => chronologies.id)
 #  fk_rails_...  (sample_id => samples.id)
 #
 FactoryBot.define do

spec/models/dendro_spec.rb

@@ -2,27 +2,44 @@
 #
 # Table name: dendros
 #
-#  id           :bigint           not null, primary key
-#  description  :text
-#  end_year     :integer
-#  is_anchored  :boolean          default(FALSE)
-#  measurements :jsonb            not null
-#  name         :string           not null
-#  offset       :integer
-#  series_code  :string           not null
-#  start_year   :integer
-#  created_at   :datetime         not null
-#  updated_at   :datetime         not null
-#  sample_id    :bigint           not null
+#  id                 :bigint           not null, primary key
+#  death_year         :integer
+#  description        :text
+#  end_year           :integer
+#  first_year         :integer
+#  is_anchored        :boolean          default(FALSE)
+#  last_year          :integer
+#  measurements       :jsonb            not null
+#  name               :string           not null
+#  object_description :text
+#  object_dimensions  :jsonb
+#  object_title       :string
+#  object_type        :string
+#  offset             :integer
+#  parameters         :jsonb
+#  pith_year          :integer
+#  project_end_date   :datetime
+#  project_objective  :text
+#  project_start_date :datetime
+#  project_title      :string
+#  series_code        :string           not null
+#  start_year         :integer
+#  wood_completeness  :jsonb
+#  created_at         :datetime         not null
+#  updated_at         :datetime         not null
+#  chronology_id      :bigint
+#  sample_id          :bigint           not null
 #
 # Indexes
 #
-#  index_dendros_on_measurements  (measurements) USING gin
-#  index_dendros_on_sample_id     (sample_id)
-#  index_dendros_on_series_code   (series_code) UNIQUE
+#  index_dendros_on_chronology_id  (chronology_id)
+#  index_dendros_on_measurements   (measurements) USING gin
+#  index_dendros_on_sample_id      (sample_id)
+#  index_dendros_on_series_code    (series_code) UNIQUE
 #
 # Foreign Keys
 #
+#  fk_rails_...  (chronology_id => chronologies.id)
 #  fk_rails_...  (sample_id => samples.id)
 #
 require 'rails_helper'