Deprecate decision making (#501)

* Deprecate decision-making files

* Bump version

* Fix conflict

* Fix conflict

* Fix linting

* Drop BO

Author: thomaspinder

examples/bayesian_optimisation.py

@@ -19,7 +19,6 @@
 filterwarnings("ignore", category=BeartypeDecorHintPep585DeprecationWarning)
 
 from gpjax import (
-    decision_making,
     gps,
     integrators,
     kernels,
@@ -40,11 +39,10 @@
 __description__ = "Didactic Gaussian processes in JAX"
 __url__ = "https://github.com/JaxGaussianProcesses/GPJax"
 __contributors__ = "https://github.com/JaxGaussianProcesses/GPJax/graphs/contributors"
-__version__ = "0.9.4"
+__version__ = "0.9.5"
 
 __all__ = [
     "base",
-    "decision_making",
     "gps",
     "integrators",
     "kernels",

examples/decision_making.py

@@ -10,11 +10,6 @@
 )
 from jaxlib.xla_extension import PjitFunction
 
-from gpjax.decision_making.test_functions import (
-    Forrester,
-    LogarithmicGoldsteinPrice,
-)
-from gpjax.decision_making.utility_functions import ThompsonSampling
 from gpjax.kernels import (
     RFF,
     ArcCosine,
@@ -149,41 +144,3 @@ def _(tree) -> PaperCitation:
         booktitle="Advances in neural information processing systems",
         citation_type="article",
     )
-
-
-####################
-# Decision making citations
-####################
-@cite.register(ThompsonSampling)
-def _(tree) -> PaperCitation:
-    return PaperCitation(
-        citation_key="wilson2020efficiently",
-        title="Efficiently sampling functions from Gaussian process posteriors",
-        authors="Wilson, James and Borovitskiy, Viacheslav and Terenin, Alexander and Mostowsky, Peter and Deisenroth, Marc",
-        year="2020",
-        booktitle="International Conference on Machine Learning",
-        citation_type="article",
-    )
-
-
-@cite.register(Forrester)
-def _(tree) -> BookCitation:
-    return BookCitation(
-        citation_key="forrester2008engineering",
-        authors="Forrester, Alexander and Sobester, Andras and Keane, Andy",
-        title="Engineering design via surrogate modelling: a practical guide",
-        year="2008",
-        publisher="John Wiley & Sons",
-    )
-
-
-@cite.register(LogarithmicGoldsteinPrice)
-def _(tree) -> PaperCitation:
-    return PaperCitation(
-        citation_key="picheny2013benchmark",
-        authors="Picheny, Victor and Wagner, Tobias and Ginsbourger, David",
-        title="A benchmark of kriging-based infill criteria for noisy optimization",
-        year="2013",
-        booktitle="Structural and multidisciplinary optimization",
-        citation_type="article",
-    )