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NGS Pipeline Development

About The Project

The purpose of this project was to explore alternative pipeline building methodologies and to gain deeper understanding of NGS data analysis pipelines.

Getting Started

Scripts are comatable with Python 3.9.14+, Pandas 2.0+, NumPy 1.24+, Biopython 1.80+, Slack_sdk 3.21.2+.

Prerequisites

  • Python
  • Pandas
  • Slack
  • NumPy
  • Biopython
  • Schedule

Installation

conda create -n env_name python=3.9.14
conda install pandas
conda install numpy
conda install -c conda-forge schedule
conda install -c conda-forge slack_sdk

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