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Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

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@COMBINE-Canberra @bioconda

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adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

🔭 Latest releases I've contributed to

  • qjiangzhao/TEtrimmer (v1.5.4, 1 week ago) - TEtrimmer: a novel tool to automate manual curation of transposable elements
  • flexidot-bio/flexidot (v2.0.1, 3 months ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  • Adamtaranto/mimeo (v1.2.1, 4 months ago) - Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
  • Adamtaranto/TIRmite (v1.2.0, 4 months ago) - Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  • Adamtaranto/tSplit (v0.1.4, 4 months ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
GitHub Stats GitHub Streak

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  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 41 4

  2. TIRmite TIRmite Public

    Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

    Python 10 4

  3. deRIP2 deRIP2 Public

    Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.

    Python

  4. TRF2GFF TRF2GFF Public

    Convert Tandem Repeat Finder dat file output into gff3 format

    Python 28 6