DIVAnd in R

Introduction

DIVAnd is a software tool, written in Julia, designed to interpolate in situ measurements onto a regular grid. The tool has been applied in several European projects to create climatologies for variable such as temperature, salinity or eutrophication variables.

R is a language widely used in the scientific community, hence the interface to call DIVAnd in a R session is the objective of the present project.

Directory structure

EMODnet-Biology-DIVAnd-R/
├── analysis
├── data/
│   ├── derived_data/
│   └── raw_data/
├── docs/
├── product/
└── scripts/

• analysis - Markdown or Jupyter notebooks
• data - Raw and derived data
• docs - Rendered reports
• product - Output product files
• scripts - Reusable code

Data series

This project does not involve any time series.

Data product

This project does not involve any data product, as the main product is the documentation on how to use DIVAnd in R, which in turn can enable users to create new products.

More information:

References

Code and methodology

Barth, A., Beckers, J.-M., Troupin, C., Alvera-Azcárate, A., and Vandenbulcke, L.: DIVAnd-1.0: n-dimensional variational data analysis for ocean observations, Geosci. Model Dev., 7, 225-241, doi:10.5194/gmd-7-225-2014, 2014.

Bezanson, J.; Edelman, A.; Karpinski, S. & Shah, V. B. Julia: A fresh approach to numerical computing SIAM Review, SIAM, 59, 65-98, doi: 10.1137/141000671, 2017

Li. JuliaCall: an R package for seamless integration between R and Julia. Journal of Open Source Software, 4(35), 1284, 10.21105/joss.01284, 2019

Citation and download link

This product should be cited as:

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Available to download in:

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Authors

Charles Troupin (ULiège)